JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOR1AIP1_chr1_179877285_179925076	0/0	c0012	1752	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0013	1752	1	0	0	0	0	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP2_chr1_179834976_179882803	1/1	c0001	1413	255	70	53	105	12	13	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0002	1413	9	9	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0003	1413	6	5	1	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0004	1413	2	2	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0005	1413	2	2	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0006	1413	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0007	1413	1	0	0	1	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0008	1413	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0009	1413	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0010	1413	1	0	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	c0011	1413	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1A_chr9_129807942_129829136	1/1	c0001	999	236	71	39	91	5	28	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	c0002	999	110	16	19	58	7	10	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	c0003	999	35	1	14	11	1	8	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	c0004	999	1	0	0	0	1	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	c0005	999	1	0	0	1	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	c0006	999	1	0	0	1	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1B_chr9_129798184_129816281	1/1	c0001	1011	326	76	48	153	12	35	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	c0002	1011	39	6	16	5	3	9	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	c0003	1011	3	0	2	0	1	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	c0004	1011	2	0	0	2	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	c0005	1011	2	2	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	c0006	1011	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	c0007	1011	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR2A_chr9_127726524_127740294	0/1	c0001	966	343	84	66	132	14	46	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0002	966	5	5	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	1/0	c0003	966	3	0	0	0	2	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0004	966	2	0	0	2	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0005	966	1	0	0	1	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0006	966	1	1	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0007	966	1	0	0	1	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0008	966	1	1	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0009	966	1	0	0	1	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0010	966	1	0	1	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0011	966	1	1	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0012	966	1	0	0	1	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	c0013	966	1	0	1	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR3A_chr1_179077070_179100996	0/1	c0001	1194	220	69	42	78	10	20	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	1/0	c0002	1194	107	2	25	63	4	12	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0003	1194	63	9	5	46	0	3	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0004	1194	10	9	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0005	1194	6	0	0	6	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0006	1194	5	4	1	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0007	1194	2	2	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0008	1194	2	2	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0009	1194	1	1	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0010	1194	1	0	0	1	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	c0011	1194	1	0	0	0	0	1	copy fasta	TOR3A	chr1	179077070	179100996