JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOR4A_chr9_137272726_137287641	1/1	c0001	1272	378	86	70	163	18	39	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0002	1272	12	0	5	7	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0003	1272	5	5	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0004	1272	3	0	0	3	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0005	1272	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0006	1272	1	0	0	1	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0007	1272	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0008	1272	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0009	1272	1	0	0	0	0	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0010	1272	1	0	0	0	0	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0011	1272	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0012	1272	1	0	0	0	0	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0013	1272	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	c0014	1272	1	0	1	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOX2_chr20_43909852_44074616	1/1	c0001	1521	269	78	54	101	7	27	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0002	1521	4	3	1	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0003	1524	4	1	2	0	1	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0004	1521	2	2	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0005	1521	2	2	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0006	1521	1	1	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0007	1521	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0008	1521	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0009	1521	1	1	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0010	1521	1	0	0	0	0	1	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0011	1521	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	c0012	1521	1	0	1	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX3_chr16_52431417_52552143	1/1	c0001	1731	176	17	31	97	8	21	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0002	1731	83	46	10	15	4	8	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0003	1731	31	2	2	18	2	7	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0004	1731	11	10	0	0	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0005	1731	3	3	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0006	1731	3	3	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0007	1731	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0008	1731	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0009	1731	2	1	1	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0010	1731	2	0	0	2	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0011	1731	2	0	2	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0012	1731	2	2	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0013	1731	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0014	1731	1	0	0	1	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	c0015	1731	1	0	0	0	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX4_chr14_21472195_21504170	0/0	c0001	1866	200	35	27	114	6	18	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	1/1	c0002	1866	193	54	41	67	8	21	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	c0003	1866	2	2	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	c0004	1866	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	c0005	1866	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	c0006	1866	1	0	0	0	0	1	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	c0007	1866	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	c0008	1866	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX_chr8_58800412_59124147	1/1	c0001	1581	213	73	33	78	2	25	copy fasta	TOX	chr8	58800412	59124147