JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BDH2_chr4_103072592_103104834	0/0	c0002	738	62	6	15	27	1	13	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0003	738	9	0	0	9	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0004	738	3	3	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0005	738	3	1	1	0	1	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0006	738	3	0	2	0	1	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0007	738	3	3	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0008	738	1	0	0	1	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0009	738	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0010	738	1	0	0	0	0	1	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0011	738	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDH2_chr4_103072592_103104834	0/0	c0012	738	1	1	0	0	0	0	copy fasta	BDH2	chr4	103072592	103104834
BDKRB1_chr14_96251210_96269763	0/0	c0001	1062	274	58	58	113	11	34	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	1/1	c0002	1062	77	7	10	45	5	8	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0003	1062	61	18	6	32	2	3	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0004	1062	8	6	2	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0005	1062	5	0	0	5	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0006	1062	4	0	0	4	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0007	1062	2	0	2	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0008	1062	2	2	0	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0009	1062	2	2	0	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0010	1062	2	0	0	2	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0011	1062	1	0	0	1	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0012	1062	1	0	0	0	0	1	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0013	1062	1	1	0	0	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0014	1062	1	0	0	1	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0015	1062	1	0	0	0	0	1	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0016	1062	1	0	0	1	0	0	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB1_chr14_96251210_96269763	0/0	c0017	1062	1	0	0	0	0	1	copy fasta	BDKRB1	chr14	96251210	96269763
BDKRB2_chr14_96199839_96249164	0/0	c0001	1176	349	79	66	156	11	37	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	1/1	c0002	1176	64	0	9	36	6	11	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0003	1176	10	8	2	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0004	1176	8	1	5	0	1	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0005	1176	1	0	0	0	0	1	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0006	1176	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0007	1176	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0008	1176	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDKRB2_chr14_96199839_96249164	0/0	c0009	1176	1	1	0	0	0	0	copy fasta	BDKRB2	chr14	96199839	96249164
BDNF_chr11_27649893_27705455	1/1	c0001	744	279	84	61	90	13	29	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	c0002	744	80	1	11	54	3	11	copy fasta	BDNF	chr11	27649893	27705455
BDNF_chr11_27649893_27705455	0/0	c0003	744	1	1	0	0	0	0	copy fasta	BDNF	chr11	27649893	27705455
BDP1_chr5_71450651_71572820	0/0	c0001	7875	84	3	15	54	1	11	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0002	7875	73	6	13	47	2	5	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0003	7875	57	18	10	19	3	7	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0004	7875	11	3	3	3	0	2	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0005	7875	10	9	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0006	7875	8	0	6	0	1	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0007	7875	7	7	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0008	7875	6	5	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0009	7875	6	6	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0010	7875	5	4	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820