JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOX_chr8_58800412_59124147	0/0	c0002	1581	6	0	5	0	0	1	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	c0003	1581	1	1	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	c0004	1581	1	1	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	c0005	1581	1	0	1	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	c0006	1581	1	0	1	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	c0007	1581	1	1	0	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TP53AIP1_chr11_128930370_128947871	1/1	c0001	375	318	48	66	163	12	27	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0002	375	125	37	16	54	3	15	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0003	375	6	4	1	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0004	375	6	4	1	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0005	375	5	3	0	0	0	2	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0006	375	1	0	0	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0007	375	1	1	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0008	375	1	0	0	0	1	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0009	375	1	0	1	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0010	375	1	1	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	c0011	375	1	0	1	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53BP1_chr15_43398061_43498156	0/0	c0001	5934	112	42	9	50	1	10	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	1/1	c0002	5934	97	4	17	60	6	8	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0003	5934	28	11	7	0	3	7	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0004	5934	13	0	1	12	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0005	5934	7	6	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0006	5934	7	0	0	7	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0007	5934	6	5	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0008	5934	2	0	2	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0009	5934	2	0	0	2	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0010	5934	2	2	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0011	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0012	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0013	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0014	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0015	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0016	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0017	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0018	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0019	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0020	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0021	5934	1	0	0	0	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0022	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0023	5934	1	0	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0024	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0025	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0026	5934	1	0	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0027	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0028	5934	1	0	0	0	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0029	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0030	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0031	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0032	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0033	5934	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156