JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TP53BP1_chr15_43398061_43498156	0/0	c0034	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0035	5934	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	c0036	5934	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP2_chr1_223774893_223850947	1/1	c0001	3405	237	53	43	110	6	23	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0002	3405	106	28	22	50	1	5	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0003	3405	18	0	0	18	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0004	3405	9	1	2	3	1	2	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0005	3405	2	0	1	0	0	1	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0006	3405	2	2	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0007	3405	1	0	0	1	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0008	3405	1	0	1	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0009	3405	1	0	1	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0010	3405	1	1	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0011	3405	1	1	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	c0012	3405	1	0	0	0	0	1	copy fasta	TP53BP2	chr1	223774893	223850947
TP53I11_chr11_44927348_44955883	1/1	c0001	570	411	97	74	180	16	42	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0002	570	3	0	0	3	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0003	570	2	0	0	2	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0004	570	2	1	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0005	562	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0006	570	1	0	1	0	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0007	570	1	0	0	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	c0008	570	1	0	0	0	0	1	copy fasta	TP53I11	chr11	44927348	44955883
TP53I13_chr17_29563701_29578157	1/1	c0001	1182	400	92	79	159	18	50	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0002	1182	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0003	1182	1	1	0	0	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0004	1182	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0007	1182	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0008	1182	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I3_chr2_24072433_24089834	1/0	c0001	999	303	72	59	126	15	30	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/1	c0002	999	34	9	6	8	3	7	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0003	999	3	0	0	0	0	3	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0004	999	2	2	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0005	999	1	1	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0006	999	1	0	1	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0007	999	1	1	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0008	999	1	1	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0009	999	1	0	0	1	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	c0010	999	1	0	0	1	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53INP1_chr8_94920972_94954378	1/1	c0001	723	351	89	60	150	12	38	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	c0002	723	4	3	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	c0003	723	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	c0004	723	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	c0005	723	1	0	0	0	0	1	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	c0006	723	1	0	1	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	c0007	723	1	0	0	0	0	1	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP2_chr20_34699344_34718436	1/1	c0001	663	401	87	67	187	16	42	copy fasta	TP53INP2	chr20	34699344	34718436