JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TP73_chr1_3647516_3741201	1/0	c0002	1911	99	15	17	56	1	9	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0003	1911	14	0	1	12	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0004	1911	6	5	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0005	1911	6	5	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0006	1911	4	4	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0007	1911	4	3	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0008	1911	3	3	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0009	1911	2	0	0	2	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0010	1911	2	2	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0011	1911	2	2	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0012	1911	2	2	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0013	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0014	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0015	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0016	1911	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0017	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0018	1911	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0019	1911	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0020	1911	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0021	1911	1	0	0	0	0	1	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0022	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0023	1871	1	0	1	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0024	1911	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0025	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0026	1911	1	1	0	0	0	0	copy fasta	TP73	chr1	3647516	3741201
TP73_chr1_3647516_3741201	0/0	c0027	1911	1	0	0	1	0	0	copy fasta	TP73	chr1	3647516	3741201
TPBGL_chr11_75235774_75248704	1/1	c0001	1149	339	58	63	158	18	40	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0002	1149	11	11	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0003	1149	5	0	0	5	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0004	1149	5	5	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0005	1149	3	3	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0006	1149	3	3	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0007	1149	3	3	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0008	1149	2	2	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0009	1149	2	0	0	2	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0010	1149	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0011	1149	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0012	1149	1	0	1	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0013	1149	1	0	0	1	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBGL_chr11_75235774_75248704	0/0	c0014	1149	1	1	0	0	0	0	copy fasta	TPBGL	chr11	75235774	75248704
TPBG_chr6_82358817_82372420	0/1	c0001	1263	264	65	44	109	9	36	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	1/0	c0002	1263	158	30	23	90	5	9	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	c0003	1263	3	0	0	0	0	3	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	c0004	1263	2	2	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	c0005	1263	2	0	0	2	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPBG_chr6_82358817_82372420	0/0	c0008	1263	1	0	1	0	0	0	copy fasta	TPBG	chr6	82358817	82372420
TPCN1_chr12_113216464_113303585	1/1	c0001	2451	228	74	17	107	9	19	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0002	2451	3	3	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585