JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPCN1_chr12_113216464_113303585	0/0	c0003	2451	3	1	1	0	1	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0004	2451	3	0	0	3	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0005	2451	2	0	2	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0006	2451	2	0	0	2	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0007	2451	2	2	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0008	2451	2	2	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0009	2451	1	0	0	0	0	1	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0010	2451	1	0	1	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0011	2451	1	0	1	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0012	2451	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN1_chr12_113216464_113303585	0/0	c0013	2451	1	1	0	0	0	0	copy fasta	TPCN1	chr12	113216464	113303585
TPCN2_chr11_69043932_69095597	0/0	c0001	2259	93	14	16	63	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/1	c0002	2259	78	13	16	28	3	17	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0003	2259	60	4	12	31	8	5	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0004	2259	30	1	10	13	3	3	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0005	2259	25	6	7	11	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0006	2259	21	15	2	4	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0007	2259	17	1	9	1	1	5	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0008	2259	10	9	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0009	2259	8	0	2	6	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0010	2259	6	0	2	0	2	2	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0011	2259	6	6	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0012	2259	5	0	0	5	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0013	2259	5	5	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0014	2259	3	3	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0015	2259	3	3	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0016	2259	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0017	2259	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0018	2259	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0019	2259	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0020	2259	2	0	0	2	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0021	2259	2	0	0	2	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0022	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0023	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0024	2292	1	0	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0025	2259	1	0	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0026	2259	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0027	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0028	2259	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0029	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0030	2259	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0031	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0032	2259	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0033	2259	1	0	0	0	1	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0034	2259	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	1/0	c0035	2259	1	0	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0036	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0037	2259	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0038	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0039	2259	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597