JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPCN2_chr11_69043932_69095597	0/0	c0040	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0041	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0042	2259	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	c0043	2259	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPD52L1_chr6_125148773_125269407	1/1	c0001	615	307	83	56	132	8	26	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	c0002	615	6	0	0	6	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	c0003	615	4	4	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	c0004	615	1	0	0	1	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	c0005	615	1	1	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	c0006	615	1	0	0	1	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L2_chr20_63860270_63896538	1/1	c0001	621	366	81	72	155	14	42	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	c0002	621	1	1	0	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	c0003	621	1	0	0	1	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L3_chr9_6323375_6336891	0/0	c0001	411	365	75	73	163	14	40	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	1/1	c0002	411	26	16	6	0	0	2	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	c0003	411	2	0	0	2	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	c0004	411	1	1	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	c0005	411	1	0	1	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	c0006	411	1	0	0	1	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52_chr8_80029745_80176564	1/1	c0001	624	223	84	42	62	8	25	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	c0002	624	2	0	2	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	c0003	624	2	0	1	0	0	1	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	c0004	624	1	0	1	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPGS1_chr19_502497_524654	1/1	c0001	873	252	68	41	98	15	28	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0002	873	45	4	20	16	0	5	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0003	874	11	2	2	6	0	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0004	873	10	0	2	6	1	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0005	873	5	5	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0006	874	3	1	1	1	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0007	873	3	0	2	0	0	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0008	873	3	3	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0009	873	3	3	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0010	873	2	2	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0011	873	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0012	873	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0013	873	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0014	873	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0015	873	1	0	0	1	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0016	874	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	c0017	873	1	1	0	0	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS2_chr18_36789108_36834002	1/1	c0001	903	264	72	51	97	12	30	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0002	903	27	1	9	1	4	12	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0003	903	22	6	0	15	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0004	903	18	0	0	18	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0005	903	2	0	0	1	0	1	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0006	903	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0007	903	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	c0008	903	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPH1_chr11_18012555_18051269	1/1	c0001	1335	391	90	68	177	16	38	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	c0002	1335	3	1	2	0	0	0	copy fasta	TPH1	chr11	18012555	18051269