JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPH1_chr11_18012555_18051269	0/0	c0003	1335	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	c0004	1335	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	c0005	1335	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	c0006	1335	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH2_chr12_71933845_72037440	1/0	c0001	1473	145	29	37	63	3	12	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/1	c0002	1473	104	19	19	48	7	10	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	c0003	1473	46	36	2	5	1	2	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	c0004	1473	31	10	7	9	1	4	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	c0005	1473	3	0	0	3	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	c0006	1473	2	0	0	0	2	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	c0007	1473	2	1	1	0	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	c0008	1473	1	1	0	0	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPI1_chr12_6862531_6875948	0/0	c0001	750	378	83	68	168	16	43	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	c0002	750	3	3	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	c0003	750	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	c0004	750	1	0	0	0	0	1	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	c0005	750	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPK1_chr7_144446941_144841053	1/1	c0001	732	118	74	22	8	2	10	copy fasta	TPK1	chr7	144446941	144841053
TPM1_chr15_63037747_63071178	0/1	c0001	855	296	66	31	157	11	30	copy fasta	TPM1	chr15	63037747	63071178
TPM1_chr15_63037747_63071178	1/0	c0002	855	95	33	36	11	2	12	copy fasta	TPM1	chr15	63037747	63071178
TPM1_chr15_63037747_63071178	0/0	c0003	855	8	0	5	0	1	2	copy fasta	TPM1	chr15	63037747	63071178
TPM1_chr15_63037747_63071178	0/0	c0004	855	1	1	0	0	0	0	copy fasta	TPM1	chr15	63037747	63071178
TPM2_chr9_35677932_35694925	1/1	c0001	855	430	94	74	197	16	47	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	c0002	855	2	0	0	2	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	c0003	855	1	1	0	0	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	c0004	865	1	1	0	0	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	c0005	855	1	0	0	1	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	c0006	855	1	0	0	0	0	1	copy fasta	TPM2	chr9	35677932	35694925
TPM3_chr1_154156813_154197100	1/1	c0001	858	369	94	68	155	12	38	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	c0002	858	2	2	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	c0003	858	1	0	0	1	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM4_chr19_16071495_16108002	1/1	c0001	747	349	68	68	150	18	43	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	c0002	747	23	19	3	0	0	1	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	c0003	747	3	2	1	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	c0004	747	2	2	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	c0005	747	1	1	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPMT_chr6_18123311_18160077	0/1	c0001	738	296	73	50	133	10	29	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	1/0	c0002	738	119	14	18	63	6	17	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	c0003	738	12	7	1	4	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	c0004	738	7	0	7	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	c0005	738	2	2	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	c0006	738	2	2	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPO_chr2_1408463_1548673	0/0	c0001	2802	37	2	11	20	1	3	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0002	2802	18	7	6	4	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0003	2802	9	1	0	5	0	3	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0004	2802	8	0	3	1	2	2	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0005	2802	6	2	0	1	0	3	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0006	2802	5	0	0	4	1	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/1	c0007	2802	5	0	2	0	1	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	1/0	c0008	2802	4	0	2	0	0	1	copy fasta	TPO	chr2	1408463	1548673