JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPO_chr2_1408463_1548673	0/0	c0009	2802	3	1	1	0	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0010	2802	3	0	0	3	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0011	2802	3	3	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0012	2802	3	3	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0013	2802	2	0	0	2	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0014	2802	2	0	2	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0015	2802	2	0	1	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0016	2802	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0017	2802	1	0	0	0	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0018	2802	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0019	2812	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0020	2802	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0021	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0022	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0023	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0024	2802	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0025	2802	1	0	0	0	1	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0026	2802	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0027	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0028	2802	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0029	2802	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0030	2802	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0031	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0032	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0033	2802	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0034	2802	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	c0035	2802	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPP1_chr11_6607768_6624422	1/1	c0001	1692	273	42	66	116	16	31	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0002	1692	129	27	18	74	0	10	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0003	1692	9	9	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0004	1692	4	3	1	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0005	1692	4	4	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0006	1692	3	3	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0007	1692	3	3	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0008	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0009	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0010	1692	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0011	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0012	1692	1	0	1	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0013	1692	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0014	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0015	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0016	1692	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0017	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	c0018	1692	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP2_chr13_102591986_102684958	0/1	c0001	3789	182	49	37	68	6	21	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	1/0	c0002	3789	129	12	28	67	3	18	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0003	3789	46	9	8	27	1	1	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0004	3789	2	0	1	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0005	3789	2	2	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958