JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPP2_chr13_102591986_102684958	0/0	c0006	3789	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0007	3789	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0008	3789	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0009	3789	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	c0010	3789	1	0	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPPP2_chr14_21025217_21037815	1/1	c0001	513	383	90	60	176	16	39	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0002	513	86	2	21	54	2	7	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0003	513	7	7	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0004	513	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0005	513	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0006	513	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0007	513	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0008	513	1	1	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	c0009	513	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP3_chr16_67384809_67398498	1/1	c0001	531	270	69	54	95	11	39	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	c0002	531	22	18	1	0	0	3	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	c0003	531	3	0	2	0	1	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	c0004	531	3	0	0	3	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	c0005	531	1	1	0	0	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	c0006	531	1	0	1	0	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP_chr5_654862_698352	0/0	c0001	660	221	57	35	105	7	17	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	1/0	c0002	660	83	4	16	46	6	10	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0003	660	24	0	10	3	2	9	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0004	660	19	0	7	6	1	5	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0005	660	15	0	4	11	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0006	660	15	15	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0007	660	11	10	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0008	660	9	0	3	6	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0009	660	6	6	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0010	660	2	1	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0011	660	1	1	0	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0012	660	1	0	0	1	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0013	660	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	c0014	660	1	0	0	0	0	1	copy fasta	TPPP	chr5	654862	698352
TPRA1_chr3_127566232_127595733	1/1	c0001	1122	407	87	70	184	17	47	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0002	1122	5	4	0	0	0	1	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0003	1122	5	0	0	5	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0004	1122	4	4	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0005	1122	2	0	1	0	1	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0006	1122	1	0	1	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0007	1122	1	0	0	1	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	c0008	1122	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRG1L_chr1_3620015_3635127	1/1	c0001	819	386	89	78	157	16	44	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0002	819	6	6	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0003	819	3	0	1	0	2	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0004	819	3	2	1	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0005	819	1	1	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0006	819	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0007	819	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0008	819	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127