JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPRG1L_chr1_3620015_3635127	0/0	c0009	819	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	c0010	819	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1_chr3_189166971_189330304	1/1	c0001	828	284	79	54	105	8	36	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	c0002	828	2	0	2	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	c0003	828	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	c0004	828	1	0	0	1	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRKB_chr2_73724873_73742345	0/1	c0001	528	237	31	43	122	10	30	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	1/0	c0002	528	182	65	38	58	4	16	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	0/0	c0003	528	7	0	0	7	0	0	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	0/0	c0004	528	1	0	1	0	0	0	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	0/0	c0005	528	1	0	0	1	0	0	copy fasta	TPRKB	chr2	73724873	73742345
TPRN_chr9_137186619_137205741	1/0	c0001	2136	263	46	59	131	9	17	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/1	c0002	2136	65	15	13	9	5	22	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0003	2136	8	8	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0004	2136	6	0	0	6	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0005	2139	5	0	0	2	0	3	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0006	2136	4	4	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0007	2136	3	3	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0008	2133	2	2	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0009	2136	2	2	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0010	2136	2	2	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0011	2136	2	2	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0012	2136	2	0	0	2	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0013	2136	1	1	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0014	2133	1	0	0	0	0	1	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0015	2136	1	0	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0016	2136	1	0	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0017	2136	1	0	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0018	2133	1	0	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0019	2136	1	1	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	c0020	2136	1	0	0	0	0	1	copy fasta	TPRN	chr9	137186619	137205741
TPRX1_chr19_47796232_47809551	1/0	c0001	1401	223	31	38	126	4	23	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0002	1401	37	13	11	0	4	9	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0003	1401	26	6	1	18	1	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0004	1401	23	18	4	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0005	1401	23	1	3	15	0	4	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0006	1365	14	1	4	0	6	3	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0007	1389	10	0	3	5	0	2	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/1	c0008	1389	8	0	5	0	0	2	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0009	1401	3	3	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0010	1401	3	3	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0011	1413	3	0	0	3	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0012	1389	3	3	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0013	1401	3	3	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0014	1401	2	2	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0015	1353	2	0	1	0	1	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0016	1389	2	2	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0017	1401	2	1	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0018	1401	2	0	0	0	0	2	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0019	1389	2	2	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551