JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BDP1_chr5_71450651_71572820	0/1	c0011	7875	5	0	3	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0012	7875	5	5	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0013	7875	5	0	0	4	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0014	7875	2	1	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0015	7875	2	0	0	2	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0016	7875	2	0	0	0	0	2	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0017	7875	2	2	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0018	7875	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0019	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0020	7875	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0021	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0022	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0023	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0024	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0025	7868	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0026	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0027	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0028	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0029	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0030	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0031	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0032	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0033	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0034	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0035	7875	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0036	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0037	7875	1	0	1	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0038	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0039	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0040	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0041	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0042	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0043	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0044	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0045	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0046	7875	1	0	0	0	1	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0047	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0048	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0049	7875	1	1	0	0	0	0	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0050	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0051	7875	1	0	0	0	0	1	copy fasta	BDP1	chr5	71450651	71572820
BDP1_chr5_71450651_71572820	0/0	c0052	7875	1	0	0	1	0	0	copy fasta	BDP1	chr5	71450651	71572820
BEAN1_chr16_66422295_66487833	1/0	c0001	780	289	85	51	109	9	34	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/1	c0002	780	2	0	0	0	1	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	c0003	780	2	0	0	2	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	c0004	780	1	1	0	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	c0005	780	1	0	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	c0006	780	1	0	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	c0007	780	1	0	1	0	0	0	copy fasta	BEAN1	chr16	66422295	66487833
BEAN1_chr16_66422295_66487833	0/0	c0008	780	1	0	0	1	0	0	copy fasta	BEAN1	chr16	66422295	66487833