JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPRX1_chr19_47796232_47809551	0/0	c0020	1401	2	2	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0021	1401	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0022	1401	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0023	1401	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0024	1401	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0025	1425	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0026	1401	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0027	1401	1	0	0	0	0	1	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0028	1401	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0029	1401	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0030	1401	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0031	1401	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0032	1401	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0033	1389	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0034	1401	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0035	1365	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0036	1449	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	c0037	1401	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX2_chr19_47854235_47866721	0/1	c0001	906	205	4	53	116	7	24	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	1/0	c0002	906	174	68	29	52	6	18	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	c0003	906	23	17	1	5	0	0	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	c0004	906	3	0	0	3	0	0	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	c0005	906	2	0	1	0	0	1	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	c0006	906	1	0	0	0	1	0	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	c0007	906	1	0	0	0	0	1	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	c0008	906	1	1	0	0	0	0	copy fasta	TPRX2	chr19	47854235	47866721
TPR_chr1_186306652_186380253	1/0	c0001	7092	255	53	57	111	8	25	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0002	7092	44	2	5	30	3	4	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/1	c0003	7092	32	3	10	12	1	5	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0004	7092	17	17	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0005	7092	12	0	0	12	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0006	7092	9	0	0	9	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0007	7092	6	0	5	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0008	7092	5	2	0	0	1	2	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0009	7092	4	0	0	4	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0010	7092	3	0	0	3	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0011	7092	2	0	1	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0012	7092	2	2	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0013	7092	2	0	2	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0014	7092	2	2	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0015	7092	1	0	0	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0016	7092	1	0	0	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0017	7092	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0018	7092	1	0	1	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0019	7092	1	0	1	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0020	7092	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0021	7092	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0022	7092	1	0	0	0	1	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0023	7092	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0024	7092	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253