JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPR_chr1_186306652_186380253	0/0	c0025	7092	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0026	7092	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	c0027	7092	1	0	0	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPSAB1_chr16_1235705_1247554	0/0	c0000	0	16	1	0	15	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0001	828	109	18	11	64	5	11	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	1/1	c0002	828	100	36	33	18	2	9	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0003	828	12	1	1	10	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0004	828	11	0	7	0	3	1	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0005	828	7	0	0	7	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0006	828	5	0	4	0	1	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0007	828	4	4	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0008	828	4	4	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0009	828	4	0	2	1	0	1	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0010	828	2	0	0	2	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0011	828	2	2	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0012	828	2	2	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0013	828	1	0	0	0	1	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0014	828	1	1	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0015	828	1	1	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0016	828	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0017	828	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0018	828	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0019	828	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0020	828	1	0	0	0	0	1	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0021	828	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0022	828	1	0	1	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0023	828	1	0	1	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	c0024	828	1	0	0	0	0	1	copy fasta	TPSAB1	chr16	1235705	1247554
TPSB2_chr16_1223336_1235184	0/0	c0001	828	177	28	26	100	9	14	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0002	828	60	24	15	17	2	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	1/0	c0003	828	24	5	3	2	2	11	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0004	829	21	3	12	0	1	5	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0005	828	6	4	2	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0006	828	6	6	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0007	828	6	6	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0008	828	5	0	4	0	0	1	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0009	828	4	0	2	0	0	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0010	828	4	0	1	1	0	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0011	828	3	3	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0012	828	3	0	0	3	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0013	828	3	0	0	3	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/1	c0014	829	3	0	2	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0015	828	2	2	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0016	828	2	0	0	2	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0017	828	2	1	1	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0018	828	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0019	828	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0020	828	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0021	815	1	0	1	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0022	828	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184