JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPSB2_chr16_1223336_1235184	0/0	c0023	828	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0024	828	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0025	828	1	0	0	0	0	1	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0026	828	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0027	828	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0028	828	1	0	1	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0029	828	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	c0030	828	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSD1_chr16_1251069_1264008	0/0	c0001	729	121	15	17	68	4	17	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0002	728	43	17	17	7	0	2	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	1/1	c0003	729	34	4	12	3	4	9	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0004	728	20	8	8	0	2	2	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0005	729	16	1	9	0	2	4	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0006	729	8	6	2	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0007	728	4	2	0	2	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0008	729	4	0	0	4	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0009	729	3	3	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0010	729	3	3	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0011	729	3	3	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0012	728	3	3	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0013	729	2	2	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0014	729	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0015	729	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0016	729	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0017	729	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0018	728	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	c0019	728	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSG1_chr16_1216651_1230268	0/0	c0001	966	212	36	32	119	8	17	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0002	966	52	13	14	5	4	16	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0003	966	39	4	8	21	2	4	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	1/1	c0004	966	21	3	12	0	1	3	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0005	966	17	2	2	11	0	2	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0006	966	12	12	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0007	966	7	7	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0008	966	6	0	0	5	0	1	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0009	966	4	4	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0010	966	3	0	1	0	0	2	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0011	966	2	0	1	0	0	1	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0012	966	2	0	0	2	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0013	966	1	0	0	1	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0014	966	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0015	966	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0016	966	1	0	0	0	1	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0017	966	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0018	966	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0019	966	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0020	966	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0021	966	1	0	0	1	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0022	966	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0023	966	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268