JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPSG1_chr16_1216651_1230268	0/0	c0024	966	1	0	0	1	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	c0025	966	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPST1_chr7_66200334_66365443	1/1	c0001	1113	339	72	62	165	14	24	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	c0002	1113	3	3	0	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	c0003	1113	1	1	0	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	c0004	1113	1	0	0	1	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	c0005	1113	1	1	0	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	c0006	1113	1	1	0	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST2_chr22_26516996_26595132	0/1	c0001	1134	275	49	40	150	9	26	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0002	1135	23	4	6	11	0	2	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0003	1134	23	21	2	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0004	1134	20	6	2	9	0	3	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0005	1134	17	7	7	1	1	1	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0006	1134	17	0	5	8	1	3	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	1/0	c0007	1134	6	0	3	0	0	2	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0008	1134	5	1	4	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0009	1134	2	0	0	0	1	1	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0010	1134	2	1	0	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0011	1135	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0012	1135	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0013	1135	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0014	1134	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0015	1134	1	0	0	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0016	1134	1	0	1	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0017	1134	1	0	0	1	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0018	1134	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0019	1134	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	c0020	1134	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPT1_chr13_45328471_45346183	1/1	c0001	519	368	84	78	154	14	36	copy fasta	TPT1	chr13	45328471	45346183
TPTE2_chr13_19417877_19566532	0/1	c0001	1569	184	61	43	42	14	23	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	1/0	c0002	1569	24	20	3	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0003	1569	3	3	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0004	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0005	1569	1	0	0	0	0	1	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0006	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0007	1569	1	0	0	1	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0008	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0009	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0010	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0011	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0012	1569	1	0	0	1	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0013	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	c0014	1569	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE_chr21_10516583_10610716	0/0	c0001	1656	63	10	14	25	4	10	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0002	1656	41	0	5	33	1	2	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0003	1656	31	10	2	17	0	2	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0004	1656	27	1	4	19	0	3	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0005	1656	13	0	9	0	1	3	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0006	1656	11	3	2	4	0	2	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0007	1656	3	0	0	3	0	0	copy fasta	TPTE	chr21	10516583	10610716