JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TPTE_chr21_10516583_10610716	0/0	c0008	1656	2	0	0	2	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0009	1656	2	2	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0010	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0011	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0012	1656	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0013	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0014	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0015	1656	1	0	1	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0016	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0017	1656	1	0	1	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0018	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	1/0	c0019	1656	1	0	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0020	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0021	1656	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0022	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0023	1656	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0024	1656	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	c0025	1656	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPX2_chr20_31734290_31806800	1/1	c0001	2244	166	32	38	62	9	23	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0002	2244	58	29	19	0	6	4	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0003	2244	22	12	7	0	1	2	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0004	2244	9	7	2	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0005	2244	3	0	0	3	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0006	2244	2	0	2	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0007	2244	2	2	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0008	2244	2	2	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0009	2244	1	0	1	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0010	2244	1	0	1	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0011	2244	1	0	0	1	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0012	2244	1	1	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0013	2244	1	0	0	0	0	1	copy fasta	TPX2	chr20	31734290	31806800
TPX2_chr20_31734290_31806800	0/0	c0014	2244	1	1	0	0	0	0	copy fasta	TPX2	chr20	31734290	31806800
TRA2A_chr7_23499780_23536981	1/0	c0001	849	392	80	74	187	14	36	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	c0002	849	6	6	0	0	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2A_chr7_23499780_23536981	0/0	c0003	849	1	0	0	1	0	0	copy fasta	TRA2A	chr7	23499780	23536981
TRA2B_chr3_185909558_185943014	1/1	c0001	867	434	92	78	204	16	42	copy fasta	TRA2B	chr3	185909558	185943014
TRABD2A_chr2_84816666_84886084	1/1	c0001	1518	165	52	36	51	2	22	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0002	1518	47	18	13	10	3	3	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0003	1518	10	3	5	1	0	1	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0004	1518	7	0	2	0	1	4	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0005	1518	6	6	0	0	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0006	1518	1	0	0	1	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0007	1518	1	0	0	1	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2A_chr2_84816666_84886084	0/0	c0008	1518	1	1	0	0	0	0	copy fasta	TRABD2A	chr2	84816666	84886084
TRABD2B_chr1_47755528_48002385	1/0	c0001	1554	160	51	31	49	8	20	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/1	c0002	1554	34	2	6	17	2	6	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0003	1554	20	8	5	5	0	2	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0004	1554	10	8	2	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0005	1554	3	3	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0006	1554	3	3	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385