JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRABD2B_chr1_47755528_48002385	0/0	c0007	1554	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0008	1554	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0009	1554	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0010	1554	2	2	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0011	1554	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0012	1554	1	0	0	0	1	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0013	1554	1	0	0	1	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0014	1554	1	0	1	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0015	1554	1	0	0	0	1	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD2B_chr1_47755528_48002385	0/0	c0016	1554	1	1	0	0	0	0	copy fasta	TRABD2B	chr1	47755528	48002385
TRABD_chr22_50180913_50204595	1/1	c0001	1131	393	74	74	186	16	41	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0002	1131	13	1	6	1	1	4	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0003	1131	12	11	0	1	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0004	1131	2	2	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0005	1131	2	2	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0006	1131	2	2	0	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0007	1131	1	0	1	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0008	1131	1	0	0	1	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0009	1131	1	0	0	0	0	1	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0010	1131	1	0	0	1	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0011	1131	1	0	1	0	0	0	copy fasta	TRABD	chr22	50180913	50204595
TRABD_chr22_50180913_50204595	0/0	c0012	1131	1	0	0	0	1	0	copy fasta	TRABD	chr22	50180913	50204595
TRADD_chr16_67149185_67164909	1/1	c0001	939	272	91	52	80	9	38	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	c0002	939	3	3	0	0	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	c0003	939	1	0	0	1	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	c0004	939	1	0	0	1	0	0	copy fasta	TRADD	chr16	67149185	67164909
TRADD_chr16_67149185_67164909	0/0	c0005	939	1	0	0	0	1	0	copy fasta	TRADD	chr16	67149185	67164909
TRAF1_chr9_120897393_120931796	0/0	c0001	1251	175	47	30	70	9	19	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	1/0	c0002	1251	113	23	26	47	6	10	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/1	c0003	1251	51	14	2	34	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0004	1251	8	0	0	8	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0005	1251	6	6	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0006	1251	5	0	4	0	0	1	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0007	1251	3	3	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0008	1251	1	0	1	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0009	1251	1	1	0	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0010	1251	1	0	1	0	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0011	1251	1	0	0	0	1	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF1_chr9_120897393_120931796	0/0	c0012	1251	1	0	0	1	0	0	copy fasta	TRAF1	chr9	120897393	120931796
TRAF2_chr9_136881516_136931607	1/1	c0001	1506	288	74	77	92	11	32	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0002	1506	5	5	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0003	1506	3	3	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0004	1506	2	0	1	0	0	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0005	1506	2	0	1	0	1	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0006	1506	2	0	0	2	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0007	1506	2	2	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0008	1506	1	1	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0009	1506	1	0	0	0	0	1	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0010	1506	1	0	1	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607
TRAF2_chr9_136881516_136931607	0/0	c0011	1506	1	1	0	0	0	0	copy fasta	TRAF2	chr9	136881516	136931607