JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAF3IP3_chr1_209751053_209787310	0/0	c0020	1656	1	0	0	1	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0021	1656	1	0	0	1	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0022	1656	1	0	1	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0023	1656	1	0	0	0	0	1	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0024	1656	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0025	1656	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0026	1656	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0027	1656	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0028	1656	1	1	0	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3IP3_chr1_209751053_209787310	0/0	c0029	1656	1	0	1	0	0	0	copy fasta	TRAF3IP3	chr1	209751053	209787310
TRAF3_chr14_102772449_102916500	0/0	c0001	1707	167	69	32	49	6	11	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	1/1	c0002	1707	121	7	31	61	4	16	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	c0003	1707	4	4	0	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	c0004	1707	1	0	1	0	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	c0005	1707	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	c0006	1707	1	0	0	1	0	0	copy fasta	TRAF3	chr14	102772449	102916500
TRAF3_chr14_102772449_102916500	0/0	c0007	1707	1	0	0	0	0	1	copy fasta	TRAF3	chr14	102772449	102916500
TRAF4_chr17_28739011_28755956	1/0	c0001	1413	278	75	45	121	8	28	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/1	c0002	1413	97	13	20	50	2	11	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	c0003	1413	2	1	1	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	c0004	1413	1	0	0	0	0	1	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	c0005	1413	1	0	0	1	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF4_chr17_28739011_28755956	0/0	c0006	1413	1	1	0	0	0	0	copy fasta	TRAF4	chr17	28739011	28755956
TRAF5_chr1_211321833_211379946	1/1	c0001	1674	290	83	51	115	9	30	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0002	1674	22	1	3	8	3	7	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0003	1674	3	3	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0004	1674	3	0	0	3	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0005	1674	2	0	0	0	0	2	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0006	1674	1	1	0	0	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0007	1674	1	0	0	0	0	1	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0008	1674	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF5_chr1_211321833_211379946	0/0	c0009	1674	1	0	0	1	0	0	copy fasta	TRAF5	chr1	211321833	211379946
TRAF6_chr11_36478769_36515272	1/1	c0001	1569	383	96	79	153	14	39	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	c0002	1569	1	0	0	1	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	c0003	1569	1	0	0	1	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	c0004	1569	1	0	0	1	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	c0005	1569	1	0	0	0	0	1	copy fasta	TRAF6	chr11	36478769	36515272
TRAF6_chr11_36478769_36515272	0/0	c0006	1569	1	0	1	0	0	0	copy fasta	TRAF6	chr11	36478769	36515272
TRAF7_chr16_2150782_2183129	1/1	c0001	2013	296	87	58	94	13	42	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0002	2013	7	6	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0003	2013	5	0	0	4	1	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0004	2013	4	0	0	4	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0005	2013	3	0	3	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0006	2013	2	0	0	2	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0007	2013	1	1	0	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0008	2013	1	0	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAF7_chr16_2150782_2183129	0/0	c0009	2013	1	0	1	0	0	0	copy fasta	TRAF7	chr16	2150782	2183129
TRAFD1_chr12_112120560_112158604	1/1	c0001	1749	247	52	51	113	5	24	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0002	1749	86	29	3	49	1	4	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0003	1749	4	1	2	0	0	1	copy fasta	TRAFD1	chr12	112120560	112158604