JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAFD1_chr12_112120560_112158604	0/0	c0004	1749	3	3	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0005	1749	2	2	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0006	1749	1	0	0	0	0	1	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0007	1749	1	1	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0008	1749	1	1	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAFD1_chr12_112120560_112158604	0/0	c0009	1749	1	1	0	0	0	0	copy fasta	TRAFD1	chr12	112120560	112158604
TRAIP_chr3_49823601_49861564	1/1	c0001	1410	254	62	50	92	11	37	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	c0002	1410	39	26	8	1	3	1	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	c0003	1410	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	c0004	1410	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAIP_chr3_49823601_49861564	0/0	c0005	1410	1	0	0	1	0	0	copy fasta	TRAIP	chr3	49823601	49861564
TRAK1_chr3_42086357_42230890	0/0	c0001	2862	86	9	18	42	3	14	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0002	2862	67	7	10	41	4	5	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	1/1	c0003	2862	31	12	6	0	3	8	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0004	2862	22	12	3	6	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0005	2862	14	6	3	0	2	3	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0006	2862	13	11	1	1	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0007	2862	10	10	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0008	2862	9	7	1	0	1	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0009	2862	7	3	2	0	1	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0010	2862	5	4	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0011	2862	4	2	2	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0012	2862	3	3	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0013	2862	3	2	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0014	2862	2	0	0	0	0	2	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0015	2862	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0016	2862	1	1	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0017	2862	1	0	0	1	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0018	2862	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0019	2862	1	1	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0020	2862	1	0	0	1	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0021	2862	1	1	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0022	2862	1	0	0	0	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0023	2862	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0024	2862	1	1	0	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0025	2862	1	0	1	0	0	0	copy fasta	TRAK1	chr3	42086357	42230890
TRAK1_chr3_42086357_42230890	0/0	c0026	2862	1	0	0	0	0	1	copy fasta	TRAK1	chr3	42086357	42230890
TRAK2_chr2_201372207_201456458	0/1	c0001	2745	139	20	27	59	7	25	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0002	2745	92	18	22	47	3	2	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0003	2745	85	17	1	59	0	8	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	1/0	c0004	2745	15	14	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0005	2745	12	8	3	0	1	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0006	2745	7	0	6	0	1	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0007	2745	6	4	2	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0008	2745	3	3	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0009	2745	2	2	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0010	2745	2	2	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0011	2745	2	2	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0012	2745	1	0	1	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0013	2745	1	0	0	1	0	0	copy fasta	TRAK2	chr2	201372207	201456458