JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAK2_chr2_201372207_201456458	0/0	c0014	2745	1	0	0	0	0	1	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0015	2745	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0016	2745	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0017	2745	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAK2_chr2_201372207_201456458	0/0	c0018	2745	1	1	0	0	0	0	copy fasta	TRAK2	chr2	201372207	201456458
TRAM1L1_chr4_117078554_117090576	1/1	c0001	1110	398	84	62	190	17	43	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0002	1110	28	11	8	8	0	1	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0003	1110	2	2	0	0	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0004	1110	2	0	0	2	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0005	1110	1	0	0	1	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0006	1110	1	0	0	0	0	1	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0007	1110	1	0	0	0	0	1	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0008	1110	1	1	0	0	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0009	1145	1	0	0	1	0	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1L1_chr4_117078554_117090576	0/0	c0010	1110	1	0	0	0	1	0	copy fasta	TRAM1L1	chr4	117078554	117090576
TRAM1_chr8_70568218_70613416	1/1	c0001	1125	318	80	62	128	12	34	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0002	1125	6	6	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0003	1125	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0004	1125	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0005	1125	1	1	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0006	1125	1	1	0	0	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0007	1125	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM1_chr8_70568218_70613416	0/0	c0008	1125	1	0	0	1	0	0	copy fasta	TRAM1	chr8	70568218	70613416
TRAM2_chr6_52492408_52582060	1/1	c0001	1113	370	87	71	154	16	40	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	c0002	1113	4	3	1	0	0	0	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	c0003	1113	3	0	0	0	0	3	copy fasta	TRAM2	chr6	52492408	52582060
TRAM2_chr6_52492408_52582060	0/0	c0004	1113	1	0	0	0	0	1	copy fasta	TRAM2	chr6	52492408	52582060
TRANK1_chr3_36821819_36950054	1/1	c0001	8910	152	30	37	63	8	12	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0002	8910	67	3	8	48	1	7	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0003	8910	15	12	3	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0004	8910	9	6	3	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0005	8910	9	7	2	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0006	8910	6	6	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0007	8910	6	0	1	4	1	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0008	8910	6	0	5	0	0	1	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0009	8910	5	0	0	5	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0010	8910	5	5	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0011	8910	4	0	0	4	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0012	8910	4	0	0	4	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0013	8910	4	0	1	0	0	3	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0014	8910	3	0	2	0	1	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0015	8910	3	3	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0016	8910	2	2	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0017	8910	2	2	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0018	8910	2	0	0	2	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0019	8910	2	2	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0020	8910	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0021	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0022	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0023	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054