JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BECN1_chr17_42805134_42829282	1/1	c0001	1353	269	78	56	90	12	31	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	c0002	1353	3	3	0	0	0	0	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	c0003	1353	1	0	0	0	0	1	copy fasta	BECN1	chr17	42805134	42829282
BECN1_chr17_42805134_42829282	0/0	c0004	1353	1	1	0	0	0	0	copy fasta	BECN1	chr17	42805134	42829282
BECN2_chr1_241952767_241964062	1/0	c0001	1296	295	62	43	146	12	31	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0002	1296	122	30	32	42	4	14	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0003	1296	11	3	0	6	0	2	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/1	c0004	1296	7	0	2	0	2	2	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0005	1296	2	0	0	1	0	1	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0006	1296	2	0	0	2	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0007	1296	1	0	0	1	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0008	1296	1	1	0	0	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0009	1296	1	0	1	0	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0010	1296	1	0	0	1	0	0	copy fasta	BECN2	chr1	241952767	241964062
BECN2_chr1_241952767_241964062	0/0	c0011	1296	1	0	0	1	0	0	copy fasta	BECN2	chr1	241952767	241964062
BEGAIN_chr14_100532147_100592417	0/0	c0001	1839	157	39	36	72	2	8	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	1/1	c0002	1839	93	4	20	41	6	20	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0003	1839	31	29	0	2	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0004	1839	18	6	0	12	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0005	1839	13	13	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0006	1839	2	2	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0007	1839	2	0	0	2	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0008	1839	2	2	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0009	1839	1	1	0	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0010	1839	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0011	1839	1	0	0	0	1	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0012	1839	1	0	1	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0013	1839	1	0	0	0	1	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0014	1851	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0015	1839	1	0	1	0	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEGAIN_chr14_100532147_100592417	0/0	c0016	1839	1	0	0	1	0	0	copy fasta	BEGAIN	chr14	100532147	100592417
BEND2_chrX_18157931_18225886	1/1	c0001	2400	202	55	46	66	9	24	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0002	2400	72	9	3	50	2	8	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0003	2400	6	0	0	6	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0004	2400	3	1	2	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0005	2400	3	3	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0006	2400	2	2	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0007	2400	1	1	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0008	2401	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0009	2400	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0010	2400	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0011	2400	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0012	2400	1	1	0	0	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND2_chrX_18157931_18225886	0/0	c0013	2400	1	0	0	1	0	0	copy fasta	BEND2	chrX	18157931	18225886
BEND3_chr6_107060182_107120515	1/1	c0001	2487	206	47	45	77	11	24	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0002	2487	103	10	19	63	2	9	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0003	2487	19	9	1	7	1	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0004	2487	16	5	1	9	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0005	2487	7	7	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0006	2487	3	3	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515