JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRANK1_chr3_36821819_36950054	0/0	c0024	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0025	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0026	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0027	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0028	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0029	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0030	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0031	8910	1	0	0	0	1	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0032	8910	1	0	0	0	0	1	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0033	8910	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0034	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0035	8910	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0036	8910	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0037	8910	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0038	8910	1	0	1	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0039	8910	1	1	0	0	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0040	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0041	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0042	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRANK1_chr3_36821819_36950054	0/0	c0043	8910	1	0	0	1	0	0	copy fasta	TRANK1	chr3	36821819	36950054
TRAP1_chr16_3653037_3722524	1/1	c0001	2115	162	53	29	70	5	3	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0002	2115	136	5	26	76	4	25	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0003	2115	38	21	3	10	1	3	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0004	2115	25	0	6	9	1	9	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0005	2115	9	0	1	7	0	1	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0006	2115	6	6	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0007	2115	6	0	6	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0008	2112	4	0	0	4	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0009	2115	3	1	1	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0010	2115	3	0	3	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0011	2115	3	0	1	0	1	1	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0012	2115	2	0	0	0	0	2	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0013	2115	2	2	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0014	2115	2	0	0	2	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0015	2115	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0016	2115	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0017	2115	1	0	0	0	0	1	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0018	2115	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0019	2115	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0020	2115	1	0	0	0	0	1	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0021	2115	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0022	2115	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0023	2115	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0024	2115	1	1	0	0	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAP1_chr16_3653037_3722524	0/0	c0025	2115	1	0	0	1	0	0	copy fasta	TRAP1	chr16	3653037	3722524
TRAPPC10_chr21_44007309_44111552	0/0	c0001	3780	117	54	17	30	3	13	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	1/1	c0002	3780	96	15	22	30	7	20	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0003	3780	15	0	4	7	0	4	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0004	3780	8	4	3	0	0	1	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0005	3780	6	0	1	5	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552