JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAPPC10_chr21_44007309_44111552	0/0	c0006	3780	3	1	2	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0007	3780	2	1	1	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0008	3780	2	0	0	2	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0009	3780	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0010	3780	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0011	3780	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0012	3780	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC10_chr21_44007309_44111552	0/0	c0013	3780	1	1	0	0	0	0	copy fasta	TRAPPC10	chr21	44007309	44111552
TRAPPC11_chr4_183654293_183718589	1/1	c0001	3402	130	34	35	39	9	11	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0002	3402	70	20	10	37	1	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0003	3402	69	19	7	36	1	6	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0004	3402	46	3	3	35	1	4	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0005	3402	33	4	5	21	1	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0006	3402	23	6	2	12	2	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0007	3402	14	0	5	6	1	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0008	3402	3	2	1	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0009	3402	3	0	0	3	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0010	3402	3	0	0	3	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0011	3402	3	3	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0012	3402	3	0	0	3	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0013	3402	2	0	0	0	0	2	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0014	3402	2	2	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0015	3402	2	0	0	2	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0016	3402	2	0	0	2	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0017	3402	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0018	3402	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0019	3402	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0020	3402	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0021	3402	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0022	3402	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0023	3402	1	0	0	0	0	1	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0024	3402	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0025	3402	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0026	3402	1	1	0	0	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0027	3402	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC11_chr4_183654293_183718589	0/0	c0028	3402	1	0	0	1	0	0	copy fasta	TRAPPC11	chr4	183654293	183718589
TRAPPC12_chr2_3374694_3484565	1/1	c0001	2208	71	8	20	27	3	11	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0002	2208	28	10	4	6	2	6	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0003	2208	20	6	0	13	0	1	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0004	2208	19	6	3	3	4	3	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0005	2208	18	1	3	11	0	3	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0006	2208	17	0	0	13	0	4	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0007	2208	13	1	5	7	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0008	2208	12	1	0	9	0	2	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0009	2208	12	1	3	6	2	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0010	2208	10	1	4	5	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0011	2208	8	7	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0012	2208	8	8	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0013	2208	8	4	0	2	0	2	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0014	2208	7	1	6	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565