JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAPPC12_chr2_3374694_3484565	0/0	c0015	2208	6	4	1	0	1	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0016	2208	6	0	0	6	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0017	2208	5	4	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0018	2208	5	1	2	0	0	2	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0019	2208	4	0	1	3	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0020	2208	4	2	0	0	0	2	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0021	2208	4	3	0	0	0	1	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0022	2208	4	0	0	4	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0023	2208	4	0	0	4	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0024	2208	4	0	0	4	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0025	2208	4	0	1	2	0	1	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0026	2208	3	3	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0027	2208	3	2	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0028	2208	3	0	0	3	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0029	2208	3	3	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0030	2208	2	1	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0031	2208	2	1	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0032	2208	2	2	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0033	2208	2	2	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0034	2208	2	1	0	0	1	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0035	2208	1	0	0	0	1	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0036	2208	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0037	2208	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0038	2208	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0039	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0040	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0041	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0042	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0043	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0044	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0045	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0046	2208	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0047	2208	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0048	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0049	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0050	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0051	2208	1	0	1	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0052	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0053	2208	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0054	2208	1	0	0	1	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC12_chr2_3374694_3484565	0/0	c0055	2208	1	1	0	0	0	0	copy fasta	TRAPPC12	chr2	3374694	3484565
TRAPPC13_chr5_65620027_65671233	1/1	c0001	1254	353	85	70	146	14	36	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	c0002	1254	9	9	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	c0003	1254	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	c0004	1254	1	0	1	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	c0005	1254	1	0	1	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC13_chr5_65620027_65671233	0/0	c0006	1254	1	1	0	0	0	0	copy fasta	TRAPPC13	chr5	65620027	65671233
TRAPPC14_chr7_100149423_100163723	1/1	c0001	1743	400	79	67	192	16	44	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	c0002	1743	1	0	1	0	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	c0003	1743	1	0	0	0	0	1	copy fasta	TRAPPC14	chr7	100149423	100163723