JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAPPC14_chr7_100149423_100163723	0/0	c0004	1743	1	1	0	0	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	c0005	1743	1	0	0	1	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	c0006	1743	1	0	0	0	0	1	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC14_chr7_100149423_100163723	0/0	c0007	1743	1	0	0	1	0	0	copy fasta	TRAPPC14	chr7	100149423	100163723
TRAPPC1_chr17_7925349_7936946	1/1	c0001	438	428	97	76	198	16	39	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC1_chr17_7925349_7936946	0/0	c0002	438	1	1	0	0	0	0	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC1_chr17_7925349_7936946	0/0	c0003	438	1	0	0	0	0	1	copy fasta	TRAPPC1	chr17	7925349	7936946
TRAPPC2B_chr19_57358551_57370405	1/1	c0001	423	401	91	65	188	16	39	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	c0002	423	4	0	0	4	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	c0003	423	2	0	0	0	0	2	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	c0004	423	1	0	1	0	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	c0005	423	1	0	0	0	0	1	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2B_chr19_57358551_57370405	0/0	c0006	423	1	1	0	0	0	0	copy fasta	TRAPPC2B	chr19	57358551	57370405
TRAPPC2L_chr16_88852127_88867678	1/1	c0001	420	416	92	79	179	18	46	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	c0002	420	23	0	3	16	0	4	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	c0003	455	7	5	2	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	c0004	420	1	0	0	1	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	c0005	420	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	c0006	420	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2L_chr16_88852127_88867678	0/0	c0007	420	1	1	0	0	0	0	copy fasta	TRAPPC2L	chr16	88852127	88867678
TRAPPC2_chrX_13707245_13739620	1/1	c0001	423	324	72	58	155	11	26	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	c0002	423	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC2_chrX_13707245_13739620	0/0	c0003	423	1	0	0	1	0	0	copy fasta	TRAPPC2	chrX	13707245	13739620
TRAPPC3L_chr6_116489989_116550684	1/1	c0001	546	344	74	56	160	15	37	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	c0002	546	11	10	0	0	1	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	c0003	546	3	0	2	0	0	1	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	c0004	546	1	0	0	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3L_chr6_116489989_116550684	0/0	c0005	546	1	0	0	1	0	0	copy fasta	TRAPPC3L	chr6	116489989	116550684
TRAPPC3_chr1_36131572_36154486	1/1	c0001	543	396	80	76	192	10	36	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC3_chr1_36131572_36154486	0/0	c0002	543	4	4	0	0	0	0	copy fasta	TRAPPC3	chr1	36131572	36154486
TRAPPC4_chr11_119013766_119029134	1/1	c0001	660	312	64	70	137	12	27	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	c0002	660	46	6	3	20	4	13	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	c0003	660	26	25	1	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	c0004	660	3	3	0	0	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC4_chr11_119013766_119029134	0/0	c0005	660	1	0	0	1	0	0	copy fasta	TRAPPC4	chr11	119013766	119029134
TRAPPC5_chr19_7675833_7692703	1/1	c0001	567	277	40	61	139	10	25	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	c0002	567	79	43	8	11	5	12	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	c0003	567	76	13	13	42	2	6	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC5_chr19_7675833_7692703	0/0	c0004	567	22	2	0	14	1	5	copy fasta	TRAPPC5	chr19	7675833	7692703
TRAPPC6A_chr19_45157933_45183237	1/1	c0001	480	424	94	80	193	14	41	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0002	480	2	0	0	2	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0003	480	2	2	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0004	480	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0005	480	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0006	480	1	0	0	0	0	1	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0007	480	1	0	0	1	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0008	480	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6A_chr19_45157933_45183237	0/0	c0009	480	1	1	0	0	0	0	copy fasta	TRAPPC6A	chr19	45157933	45183237
TRAPPC6B_chr14_39142814_39175333	1/1	c0001	477	424	92	79	195	18	38	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	c0002	477	2	1	0	1	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333