JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAPPC6B_chr14_39142814_39175333	0/0	c0003	477	2	0	0	0	0	2	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	c0004	477	1	1	0	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC6B_chr14_39142814_39175333	0/0	c0005	477	1	0	1	0	0	0	copy fasta	TRAPPC6B	chr14	39142814	39175333
TRAPPC8_chr18_31824197_31948128	0/1	c0001	4308	168	46	35	58	12	16	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0002	4308	78	12	8	49	1	8	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0003	4308	34	0	9	14	2	9	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0004	4308	14	6	1	6	0	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0005	4308	10	0	1	7	1	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0006	4308	9	8	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0007	4308	5	2	2	0	0	1	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0008	4308	5	5	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0009	4308	4	4	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0010	4308	4	4	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0011	4308	3	0	0	3	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0012	4308	2	0	0	2	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0013	4308	2	0	0	2	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0014	4308	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0015	4308	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0016	4308	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0017	4308	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0018	4308	1	0	0	1	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0019	4308	1	0	1	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0020	4308	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0021	4308	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0022	4308	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0023	4308	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	0/0	c0024	4308	1	1	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC8_chr18_31824197_31948128	1/0	c0025	4308	1	0	0	0	0	0	copy fasta	TRAPPC8	chr18	31824197	31948128
TRAPPC9_chr8_139722725_140462744	0/0	c0001	3447	19	9	8	0	1	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0002	3447	18	9	8	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0003	3447	13	8	3	0	1	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0004	3447	11	7	3	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0005	3447	7	4	2	1	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0006	3447	4	1	3	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	1/0	c0007	3447	3	2	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/1	c0008	3447	3	1	0	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0009	3447	2	1	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0010	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0011	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0012	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0013	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0014	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0015	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0016	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0017	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0018	3447	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0019	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0020	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0021	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0022	3447	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744