JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRAPPC9_chr8_139722725_140462744	0/0	c0023	3447	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0024	3447	1	0	0	0	0	1	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0025	3447	1	0	1	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0026	3447	1	0	0	1	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRAPPC9_chr8_139722725_140462744	0/0	c0027	3447	1	1	0	0	0	0	copy fasta	TRAPPC9	chr8	139722725	140462744
TRARG1_chr17_1274662_1305978	0/0	c0001	534	275	64	60	113	10	28	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	1/0	c0002	534	43	8	8	15	2	9	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0003	534	35	19	5	4	2	5	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0004	534	30	4	3	22	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0005	534	5	0	3	0	0	2	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/1	c0006	534	4	0	1	0	0	2	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0007	534	3	0	1	1	0	1	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0008	534	2	0	2	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0009	534	2	0	0	2	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0010	534	1	0	1	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0011	534	1	1	0	0	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRARG1_chr17_1274662_1305978	0/0	c0012	534	1	0	0	1	0	0	copy fasta	TRARG1	chr17	1274662	1305978
TRAT1_chr3_108817786_108860005	1/1	c0001	561	314	80	72	100	14	46	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0002	561	9	9	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0003	561	5	0	0	5	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0004	561	4	4	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0005	561	3	3	0	0	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0006	561	3	0	0	3	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0007	561	1	0	0	1	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRAT1_chr3_108817786_108860005	0/0	c0008	561	1	0	0	1	0	0	copy fasta	TRAT1	chr3	108817786	108860005
TRDMT1_chr10_17132336_17206672	1/1	c0001	1176	217	49	34	109	7	16	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0002	1176	101	23	18	41	5	14	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0003	1176	45	8	17	14	2	4	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0004	1176	4	4	0	0	0	0	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0005	1176	4	4	0	0	0	0	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0006	1176	4	2	2	0	0	0	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0007	1176	2	2	0	0	0	0	copy fasta	TRDMT1	chr10	17132336	17206672
TRDMT1_chr10_17132336_17206672	0/0	c0008	1176	1	0	1	0	0	0	copy fasta	TRDMT1	chr10	17132336	17206672
TRDN_chr6_123211339_123641950	0/0	c0001	2190	28	9	8	6	2	3	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0002	2190	23	2	5	13	1	2	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0003	2190	11	11	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0004	2190	11	8	1	0	0	2	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0005	2190	10	1	5	1	0	3	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0006	2190	7	4	2	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0007	2190	7	6	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0008	2190	6	6	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0009	2190	6	0	2	2	1	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0010	2184	6	0	0	6	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/1	c0011	2190	5	2	0	2	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0012	2190	4	1	0	0	0	3	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0013	2190	2	0	2	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	1/0	c0014	2190	2	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0015	2190	2	2	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0016	2190	2	1	1	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0017	2190	2	2	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950