JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRDN_chr6_123211339_123641950	0/0	c0018	2184	1	0	0	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0019	2190	1	0	0	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0020	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0021	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0022	2190	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0023	2190	1	0	0	1	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0024	2190	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0025	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0026	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0027	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0028	2190	1	0	0	0	0	1	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0029	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0030	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0031	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0032	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0033	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0034	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TRDN_chr6_123211339_123641950	0/0	c0035	2190	1	1	0	0	0	0	copy fasta	TRDN	chr6	123211339	123641950
TREH_chr11_118652316_118684650	1/1	c0001	1752	209	72	47	54	12	22	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0002	1752	73	0	5	62	0	6	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0003	1752	63	1	15	35	2	10	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0004	1752	5	0	0	5	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0005	1752	4	4	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0006	1752	4	4	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0007	1752	4	0	0	4	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0008	1752	3	0	0	3	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0009	1752	3	0	0	0	0	3	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0010	1752	3	3	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0011	1752	2	0	0	2	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0012	1752	2	1	1	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0013	1752	2	0	0	2	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0014	1752	2	0	2	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0015	1752	1	0	0	1	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0016	1752	1	0	0	0	0	1	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0017	1752	1	0	1	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0018	1752	1	0	0	0	0	1	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0019	1752	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0020	1752	1	0	1	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0021	1752	1	0	0	1	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0022	1752	1	0	0	1	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0023	1752	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0024	1752	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0025	1752	1	0	0	0	0	1	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0026	1752	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREH_chr11_118652316_118684650	0/0	c0027	1752	1	1	0	0	0	0	copy fasta	TREH	chr11	118652316	118684650
TREM1_chr6_41268605_41291682	1/1	c0001	705	307	62	62	130	14	37	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	c0002	705	95	14	11	63	4	3	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	c0003	705	12	12	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	c0004	705	5	4	1	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	c0005	705	3	3	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682