JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TREM1_chr6_41268605_41291682	0/0	c0006	705	2	0	2	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	c0007	705	1	1	0	0	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM1_chr6_41268605_41291682	0/0	c0008	705	1	0	0	1	0	0	copy fasta	TREM1	chr6	41268605	41291682
TREM2_chr6_41153508_41168116	1/1	c0001	693	299	79	58	112	13	35	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0002	693	16	16	0	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0003	693	3	0	1	0	0	2	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0004	693	1	0	0	0	1	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0005	693	1	0	1	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0006	693	1	0	0	1	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0007	693	1	0	0	1	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0008	693	1	0	0	0	0	1	copy fasta	TREM2	chr6	41153508	41168116
TREM2_chr6_41153508_41168116	0/0	c0009	693	1	1	0	0	0	0	copy fasta	TREM2	chr6	41153508	41168116
TREML1_chr6_41144337_41159347	1/1	c0001	936	270	79	52	90	12	35	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0002	936	12	12	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0003	936	3	3	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0004	936	1	1	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0005	936	1	1	0	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0006	936	1	0	0	1	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0007	936	1	0	1	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0008	936	1	0	0	0	0	1	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0009	936	1	0	1	0	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML1_chr6_41144337_41159347	0/0	c0010	936	1	0	0	1	0	0	copy fasta	TREML1	chr6	41144337	41159347
TREML2_chr6_41184749_41206149	1/0	c0001	966	256	74	31	122	9	19	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0002	966	122	17	28	55	5	17	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0003	966	30	0	9	16	1	4	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0004	966	18	2	0	15	0	1	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0005	966	8	6	2	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0006	966	7	0	3	1	0	3	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/1	c0007	966	4	0	2	0	1	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0008	966	2	0	2	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0009	966	2	0	0	0	0	2	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0010	966	1	0	1	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0011	966	1	1	0	0	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0012	966	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0013	966	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML2_chr6_41184749_41206149	0/0	c0014	966	1	0	0	1	0	0	copy fasta	TREML2	chr6	41184749	41206149
TREML4_chr6_41223349_41243882	0/1	c0001	603	292	20	60	167	12	32	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	1/0	c0002	603	80	37	11	25	3	3	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0003	603	16	15	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0004	603	16	13	2	0	1	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0005	603	9	0	1	1	0	7	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0006	603	6	0	0	6	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0007	603	3	3	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0008	603	2	0	0	0	2	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0009	603	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0010	603	1	0	1	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0011	603	1	0	0	1	0	0	copy fasta	TREML4	chr6	41223349	41243882
TREML4_chr6_41223349_41243882	0/0	c0012	603	1	1	0	0	0	0	copy fasta	TREML4	chr6	41223349	41243882
TRERF1_chr6_42219931_42456926	1/1	c0001	3639	88	27	9	36	3	11	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0002	3639	21	2	4	11	0	4	copy fasta	TRERF1	chr6	42219931	42456926