JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRERF1_chr6_42219931_42456926	0/0	c0003	3639	9	0	2	6	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0004	3639	6	6	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0005	3639	5	5	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0006	3642	4	4	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0007	3639	3	0	3	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0008	3642	3	3	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0009	3639	3	3	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0010	3639	3	1	2	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0011	3639	3	3	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0012	3639	3	3	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0013	3642	2	2	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0014	3639	2	0	0	0	1	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0015	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0016	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0017	3639	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0018	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0019	3627	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0020	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0021	3639	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0022	3639	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0023	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0024	3642	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0025	3639	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0026	3639	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0027	3642	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0028	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0029	3639	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0030	3639	1	0	0	1	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0031	3639	1	0	0	0	0	1	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0032	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0033	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0034	3639	1	0	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0035	3642	1	0	1	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0036	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0037	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0038	3642	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TRERF1_chr6_42219931_42456926	0/0	c0039	3639	1	1	0	0	0	0	copy fasta	TRERF1	chr6	42219931	42456926
TREX1_chr3_48461230_48472645	0/1	c0001	945	217	52	39	84	11	30	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	1/0	c0002	945	138	18	23	77	5	14	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	c0003	945	11	8	3	0	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	c0004	945	1	1	0	0	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	c0005	945	1	1	0	0	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	c0006	945	1	0	0	1	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX1_chr3_48461230_48472645	0/0	c0007	945	1	0	1	0	0	0	copy fasta	TREX1	chr3	48461230	48472645
TREX2_chrX_153439473_153451056	1/1	c0001	711	285	37	56	150	10	30	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0002	711	34	32	2	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0003	711	6	5	1	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0004	711	2	0	0	2	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0005	711	2	2	0	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0006	711	2	2	0	0	0	0	copy fasta	TREX2	chrX	153439473	153451056