JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TREX2_chrX_153439473_153451056	0/0	c0007	712	1	0	0	1	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0008	711	1	0	1	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0009	711	1	1	0	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0010	711	1	1	0	0	0	0	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0011	711	1	0	0	0	0	1	copy fasta	TREX2	chrX	153439473	153451056
TREX2_chrX_153439473_153451056	0/0	c0012	710	1	0	0	0	0	1	copy fasta	TREX2	chrX	153439473	153451056
TRHDE_chr12_72267370_72675758	0/1	c0001	3210	60	10	16	27	4	2	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0002	3213	24	7	8	3	2	4	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0003	3210	20	14	4	0	2	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0004	3213	15	13	1	0	0	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	1/0	c0005	3210	13	5	1	2	2	2	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0006	3210	5	5	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0007	3210	4	4	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0008	3213	3	3	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0009	3207	2	2	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0010	3210	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0011	3213	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0012	3213	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0013	3213	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0014	3210	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0015	3210	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0016	3210	1	0	0	0	0	1	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0017	3210	1	0	1	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0018	3210	1	1	0	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0019	3210	1	0	0	1	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0020	3210	1	0	0	1	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHDE_chr12_72267370_72675758	0/0	c0021	3210	1	0	1	0	0	0	copy fasta	TRHDE	chr12	72267370	72675758
TRHR_chr8_109081585_109126565	1/1	c0001	1197	370	91	67	152	15	43	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	c0002	1197	3	3	0	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	c0003	1197	1	0	0	1	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	c0004	1197	1	0	1	0	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	c0005	1197	1	0	0	0	0	1	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	c0006	1197	1	0	0	0	1	0	copy fasta	TRHR	chr8	109081585	109126565
TRHR_chr8_109081585_109126565	0/0	c0007	1150	1	0	0	1	0	0	copy fasta	TRHR	chr8	109081585	109126565
TRH_chr3_129969720_129982935	0/1	c0001	729	259	35	41	129	14	39	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0002	729	111	19	27	60	1	4	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	1/0	c0003	729	16	14	1	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0004	729	13	6	4	0	3	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0005	729	6	5	1	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0006	729	4	4	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0007	729	2	2	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0008	729	1	0	0	0	0	1	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0009	729	1	1	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0010	729	1	1	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0011	729	1	1	0	0	0	0	copy fasta	TRH	chr3	129969720	129982935
TRH_chr3_129969720_129982935	0/0	c0012	729	1	0	0	1	0	0	copy fasta	TRH	chr3	129969720	129982935
TRIAP1_chr12_120438964_120451384	1/1	c0001	231	418	96	70	194	16	40	copy fasta	TRIAP1	chr12	120438964	120451384
TRIB1_chr8_125425358_125443403	1/1	c0001	1119	260	57	44	133	11	13	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0002	1119	186	24	32	89	7	34	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0003	1119	13	12	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403