Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABTB1_chr3_127667952_127685926	0/0	c0004	1437	5	0	0	5	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0005	1437	4	4	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0006	1437	3	1	0	2	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0007	1437	3	3	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0008	1437	2	0	0	0	0	2	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0009	1437	2	0	0	2	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0010	1437	1	0	0	1	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0012	1437	1	1	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0013	1437	1	0	0	0	1	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0014	1437	1	1	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0015	1437	1	0	0	1	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0016	1437	1	1	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	c0017	1437	1	0	0	0	0	1	copy fasta	ABTB1	chr3	127667952	127685926
ABTB2_chr11_34145987_34363010	1/1	c0001	3078	161	32	43	54	12	18	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0002	3078	48	17	2	29	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0003	3078	8	8	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0004	3078	7	6	1	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0005	3078	5	5	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0006	3078	3	3	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0007	3078	2	2	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0008	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0009	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0010	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0011	3078	1	0	0	1	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0012	3078	1	0	1	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0013	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0014	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0015	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0016	3078	1	0	1	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0017	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0018	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB2_chr11_34145987_34363010	0/0	c0019	3078	1	1	0	0	0	0	copy fasta	ABTB2	chr11	34145987	34363010
ABTB3_chr12_107313434_107664642	0/0	c0001	3315	51	26	9	8	2	6	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0002	3315	35	4	4	18	2	7	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0003	3315	16	1	2	10	1	2	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0004	3315	13	2	3	7	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0005	3315	12	10	2	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0006	3315	7	0	3	3	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0007	3315	6	0	0	4	1	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0008	3315	6	6	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0009	3315	5	0	4	0	1	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0010	3315	3	3	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0011	3315	3	3	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0012	3315	3	2	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0013	3315	2	0	0	0	0	2	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0014	3315	2	2	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0015	3315	2	1	0	0	1	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0016	3315	2	1	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	c0017	3315	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642