JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BEND3_chr6_107060182_107120515	0/0	c0007	2487	2	0	0	0	0	2	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0008	2487	1	0	0	0	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0009	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0010	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0011	2487	1	0	0	0	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0012	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0013	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0014	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0015	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0016	2487	1	0	0	0	0	1	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0017	2487	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0018	2487	1	0	0	1	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND3_chr6_107060182_107120515	0/0	c0019	2487	1	1	0	0	0	0	copy fasta	BEND3	chr6	107060182	107120515
BEND4_chr4_42105853_42157655	1/1	c0001	1605	211	83	46	42	8	30	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0002	1605	3	3	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0003	1605	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0004	1605	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0005	1605	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0006	1605	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0007	1605	1	0	1	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0008	1605	1	0	0	0	1	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0009	1605	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0010	1605	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0011	1605	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0012	1605	1	0	0	0	1	0	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0013	1605	1	0	0	0	0	1	copy fasta	BEND4	chr4	42105853	42157655
BEND4_chr4_42105853_42157655	0/0	c0014	1605	1	1	0	0	0	0	copy fasta	BEND4	chr4	42105853	42157655
BEND5_chr1_48722519_48781891	0/1	c0001	1266	206	49	45	70	10	31	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	1/0	c0002	1266	128	25	17	78	2	5	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	c0003	1266	3	3	0	0	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	c0004	1266	1	0	0	1	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	c0005	1266	1	1	0	0	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	c0006	1266	1	0	0	1	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	c0007	1266	1	1	0	0	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND5_chr1_48722519_48781891	0/0	c0008	1266	1	1	0	0	0	0	copy fasta	BEND5	chr1	48722519	48781891
BEND6_chr6_56950107_57032346	1/1	c0001	840	203	65	38	80	4	14	copy fasta	BEND6	chr6	56950107	57032346
BEND6_chr6_56950107_57032346	0/0	c0002	840	1	1	0	0	0	0	copy fasta	BEND6	chr6	56950107	57032346
BEND7_chr10_13436088_13534014	0/0	c0001	1242	149	36	42	43	6	22	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/1	c0002	1242	62	0	16	34	3	8	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	1/0	c0003	1242	55	38	5	8	0	3	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0004	1242	23	6	5	10	1	1	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0005	1242	3	3	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0006	1242	2	2	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0007	1242	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0008	1242	1	0	0	1	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0009	1242	1	0	0	1	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0010	1242	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0011	1242	1	0	0	1	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEND7_chr10_13436088_13534014	0/0	c0012	1242	1	1	0	0	0	0	copy fasta	BEND7	chr10	13436088	13534014
BEST1_chr11_61945351_61969461	0/0	c0001	1758	169	7	11	128	0	23	copy fasta	BEST1	chr11	61945351	61969461