JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIB1_chr8_125425358_125443403	0/0	c0004	1119	4	0	3	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0005	1119	4	4	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0006	1119	1	0	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0008	1119	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0009	1119	1	0	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0010	1119	1	0	0	1	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0011	1119	1	0	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0012	1119	1	0	1	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0013	1119	1	0	0	0	0	1	copy fasta	TRIB1	chr8	125425358	125443403
TRIB1_chr8_125425358_125443403	0/0	c0014	1119	1	1	0	0	0	0	copy fasta	TRIB1	chr8	125425358	125443403
TRIB2_chr2_12711936_12747734	1/1	c0001	1032	380	95	69	164	10	40	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	c0002	1032	2	0	2	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	c0003	1032	2	0	2	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	c0004	1032	1	1	0	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	c0006	1032	1	0	0	1	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB2_chr2_12711936_12747734	0/0	c0007	1032	1	0	1	0	0	0	copy fasta	TRIB2	chr2	12711936	12747734
TRIB3_chr20_375760_402559	1/0	c0001	1077	122	14	38	52	7	10	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0002	1077	102	22	25	39	6	10	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/1	c0003	1077	91	32	7	46	0	5	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0004	1077	78	10	4	51	0	13	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0005	1077	27	4	1	21	0	1	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0006	1077	11	2	1	0	2	6	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0007	1077	5	0	2	1	0	2	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0008	1077	2	2	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0009	1077	2	2	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0010	1077	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0011	1077	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0012	1077	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0013	1077	1	0	0	0	1	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0014	1077	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0015	1077	1	1	0	0	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0016	1077	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0017	1077	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0018	1077	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0019	1077	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0020	1077	1	0	0	0	0	1	copy fasta	TRIB3	chr20	375760	402559
TRIB3_chr20_375760_402559	0/0	c0021	1077	1	0	0	1	0	0	copy fasta	TRIB3	chr20	375760	402559
TRIL_chr7_28948358_28963330	0/1	c0001	2436	174	57	32	53	10	21	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0002	2436	143	14	25	91	2	11	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	1/0	c0003	2436	71	2	16	38	4	10	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0004	2436	5	5	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0005	2436	4	3	1	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0006	2436	4	0	0	0	0	4	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0007	2436	3	3	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0008	2436	3	0	0	3	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0009	2436	3	3	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0010	2436	2	2	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0011	2436	2	0	0	2	0	0	copy fasta	TRIL	chr7	28948358	28963330