JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIL_chr7_28948358_28963330	0/0	c0012	2436	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0013	2436	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0014	2436	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0015	2436	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0016	2436	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0017	2436	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0018	2436	1	0	0	1	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIL_chr7_28948358_28963330	0/0	c0019	2436	1	1	0	0	0	0	copy fasta	TRIL	chr7	28948358	28963330
TRIM10_chr6_30146943_30166211	0/1	c0001	1446	377	67	57	196	17	39	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0002	1446	33	19	12	0	1	1	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0003	1446	29	0	6	22	0	1	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0004	1446	8	0	3	0	0	5	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0005	1446	5	5	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0006	1446	4	0	3	0	0	1	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0007	1446	2	0	0	2	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0008	1446	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0010	1446	1	0	0	1	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0011	1446	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0012	1446	1	0	0	0	0	1	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0013	1446	1	0	1	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM10_chr6_30146943_30166211	0/0	c0014	1446	1	1	0	0	0	0	copy fasta	TRIM10	chr6	30146943	30166211
TRIM11_chr1_228388676_228411835	1/0	c0001	1407	260	63	56	93	12	35	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/1	c0002	1407	87	20	7	54	2	3	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0003	1407	20	4	2	13	0	1	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0004	1407	6	6	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0005	1407	4	4	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0006	1407	3	0	0	3	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0007	1407	2	2	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0008	1407	1	0	0	1	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0009	1407	1	0	1	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0010	1407	1	0	0	0	0	1	copy fasta	TRIM11	chr1	228388676	228411835
TRIM11_chr1_228388676_228411835	0/0	c0011	1407	1	1	0	0	0	0	copy fasta	TRIM11	chr1	228388676	228411835
TRIM13_chr13_49992042_50023467	1/1	c0001	1224	373	84	62	161	16	48	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	c0002	1224	11	7	4	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	c0003	1224	3	3	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	c0004	1224	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	c0005	1224	1	0	0	1	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM13_chr13_49992042_50023467	0/0	c0006	1224	1	1	0	0	0	0	copy fasta	TRIM13	chr13	49992042	50023467
TRIM14_chr9_98079353_98124222	1/1	c0001	1329	324	51	58	161	14	38	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0002	1329	7	7	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0003	1329	7	6	1	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0004	1329	5	5	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0005	1329	4	3	1	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0006	1329	2	2	0	0	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0007	1329	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0008	1329	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM14_chr9_98079353_98124222	0/0	c0009	1329	1	0	0	1	0	0	copy fasta	TRIM14	chr9	98079353	98124222
TRIM15_chr6_30158546_30177693	0/0	c0001	1398	192	53	39	82	5	13	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0002	1398	86	0	6	63	3	14	copy fasta	TRIM15	chr6	30158546	30177693