JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM15_chr6_30158546_30177693	0/1	c0003	1398	69	15	9	32	3	9	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0004	1398	64	4	19	35	3	3	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0005	1398	16	14	0	1	0	1	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0006	1398	15	6	3	0	0	6	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0007	1398	4	0	3	0	0	1	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0008	1398	3	3	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0009	1398	2	0	0	0	2	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0010	1398	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0011	1398	1	0	1	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0012	1398	1	0	0	0	0	1	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0013	1398	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0014	1398	1	0	1	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0015	1398	1	1	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0016	1398	1	1	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0017	1398	1	0	1	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0018	1398	1	1	0	0	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM15_chr6_30158546_30177693	0/0	c0019	1384	1	0	0	1	0	0	copy fasta	TRIM15	chr6	30158546	30177693
TRIM16_chr17_15622966_15689311	1/1	c0001	1695	170	26	43	84	2	13	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0002	1695	86	18	14	42	3	9	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0003	1695	20	0	1	14	0	5	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0004	1695	14	14	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0005	1695	10	0	0	9	0	1	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0006	1695	9	3	3	1	0	2	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0007	1695	7	7	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0008	1695	5	5	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0009	1695	5	1	2	2	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0010	1695	4	3	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0011	1695	4	0	2	2	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0012	1695	4	4	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0013	1695	3	3	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0014	1695	3	2	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0015	1695	3	3	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0016	1695	2	2	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0017	1695	2	2	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0018	1695	1	0	0	1	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0019	1695	1	0	0	1	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0020	1695	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0021	1695	1	0	0	0	0	1	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0022	1695	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0023	1695	1	0	0	0	1	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0024	1695	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0025	1695	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	c0026	1695	1	0	0	0	0	1	copy fasta	TRIM16	chr17	15622966	15689311
TRIM17_chr1_228402935_228421861	1/0	c0001	1434	234	23	55	107	12	36	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/1	c0002	1434	105	39	6	54	2	3	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0003	1434	23	4	2	16	0	1	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0004	1434	17	17	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0005	1434	5	5	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0006	1434	4	0	0	4	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0007	1434	4	4	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861