JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM17_chr1_228402935_228421861	0/0	c0008	1434	3	0	3	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0009	1434	3	2	1	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0010	1434	2	0	2	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0011	891	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0012	1434	1	0	1	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0013	1434	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0015	1434	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0016	1434	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0017	1434	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0018	1434	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0019	1434	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0020	1434	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0021	1434	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	c0022	1434	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM21_chr11_4379897_4398702	1/0	c0001	1428	351	73	65	165	15	32	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/1	c0002	1428	118	19	16	63	3	16	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	c0003	1428	4	0	2	0	0	2	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	c0004	1428	2	1	1	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	c0005	1428	2	2	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	c0006	1428	1	1	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM22_chr11_5684790_5715863	1/0	c0001	1497	126	10	15	93	2	5	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0002	1497	73	13	6	51	0	3	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/1	c0003	1497	51	16	16	2	1	15	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0004	1497	47	6	13	18	2	8	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0005	1497	33	1	12	12	4	4	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0006	1497	30	2	3	20	3	2	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0007	1497	16	0	0	16	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0008	1497	15	7	0	4	0	4	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0009	1497	14	1	8	4	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0010	1497	7	7	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0011	1497	4	1	2	0	1	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0012	1497	4	4	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0013	1497	4	4	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0014	1497	3	3	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0015	1497	3	0	0	3	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0016	1497	3	0	0	3	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0017	1497	2	0	0	0	2	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0018	1497	2	1	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0019	1497	2	2	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0020	1497	2	0	1	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0021	1497	2	0	1	0	1	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0022	1497	2	2	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0023	1497	2	0	0	2	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0024	1497	2	0	2	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0025	1497	2	1	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0026	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0027	1497	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0028	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0029	1497	1	0	0	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863