JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM22_chr11_5684790_5715863	0/0	c0030	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0031	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0032	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0033	1497	1	0	0	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0034	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0035	1497	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0036	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0037	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0038	1497	1	0	0	0	1	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0039	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0040	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0041	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0042	1497	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0043	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0044	1497	1	0	0	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0045	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0046	1497	1	0	0	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0047	1497	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0048	1497	1	0	0	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0049	1497	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0050	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0051	1497	1	0	0	0	1	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0052	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0053	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	c0054	1497	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM23_chr5_65584690_65629333	1/0	c0001	1725	315	74	60	130	16	34	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/1	c0002	1725	38	9	5	17	0	6	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0003	1725	6	6	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0004	1725	5	5	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0005	1725	3	0	3	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0006	1725	2	1	1	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0007	1725	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0008	1725	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	c0009	1725	1	0	1	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM24_chr7_138455259_138594996	1/1	c0001	3153	282	68	51	121	5	35	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0002	3153	18	3	5	1	2	7	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0003	3153	3	3	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0004	3153	2	2	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0005	3153	2	2	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0006	3153	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0007	3153	1	0	0	0	1	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0008	3153	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0009	3153	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	c0010	3153	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM25_chr17_56882909_56919049	0/0	c0001	1893	259	66	44	100	13	36	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	1/1	c0002	1893	96	10	27	44	2	11	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0003	1893	11	11	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0004	1893	6	0	0	6	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0005	1893	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0006	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049