JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM25_chr17_56882909_56919049	0/0	c0007	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0008	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0009	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0010	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0011	1893	1	0	1	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0012	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0013	1893	1	0	0	0	1	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0014	1893	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0015	1893	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	c0016	1893	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM26_chr6_30179455_30218406	0/1	c0001	1620	230	35	37	123	9	25	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0002	1620	86	42	13	23	3	5	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0003	1620	70	8	21	29	3	9	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0004	1620	22	0	6	15	0	1	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0005	1620	18	9	0	7	0	2	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0006	1620	7	0	0	1	0	6	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0007	1620	3	0	3	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0008	1620	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0009	1620	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0010	1620	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0011	1620	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	c0012	1620	1	0	0	0	1	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM27_chr6_28898002_28928985	0/1	c0001	1542	395	89	66	182	15	42	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0002	1542	5	0	4	0	1	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0003	1542	4	4	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0004	1542	1	1	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0005	1542	1	0	0	0	0	1	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0006	1542	1	0	0	0	0	1	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0007	1542	1	1	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	c0008	1542	1	1	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM28_chr19_58539064_58555715	1/1	c0001	2508	262	73	48	94	14	31	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0002	2508	72	4	8	54	2	4	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0003	2508	51	14	15	16	2	4	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0004	2508	7	0	0	7	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0005	2508	2	0	0	2	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0006	2508	1	0	0	1	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0007	2508	1	0	0	0	0	1	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0008	2508	1	0	0	1	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0009	2508	1	0	0	1	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0010	2508	1	1	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0011	2508	1	0	1	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0012	2508	1	1	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	c0013	2508	1	1	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM29_chr11_120106286_120143113	0/1	c0001	1767	322	83	56	131	11	40	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0002	1767	31	0	4	26	0	1	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	1/0	c0003	1767	25	1	9	7	3	4	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0004	1767	6	4	2	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0005	1767	6	6	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0006	1767	2	0	0	2	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0007	1767	1	0	0	1	0	0	copy fasta	TRIM29	chr11	120106286	120143113