JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM29_chr11_120106286_120143113	0/0	c0008	1767	1	0	0	0	0	1	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0009	1767	1	1	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0010	1767	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0011	1767	1	0	0	1	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0012	1767	1	1	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0013	1728	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	c0014	1767	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM2_chr4_153199443_153344317	1/0	c0001	2316	133	31	28	53	6	14	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/1	c0002	2316	79	30	9	21	2	16	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0003	2316	44	20	12	6	3	3	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0004	2316	3	1	0	2	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0005	2316	3	0	1	1	1	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0006	2316	2	2	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0007	2316	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0008	2316	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0009	2316	1	0	0	1	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	c0010	2316	1	0	0	0	0	1	copy fasta	TRIM2	chr4	153199443	153344317
TRIM31_chr6_30097897_30118090	0/0	c0001	1278	141	23	14	86	5	13	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0002	1278	79	13	32	28	2	4	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0003	1278	54	10	9	34	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0004	1278	30	1	9	16	2	2	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0005	1278	22	0	1	14	6	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/1	c0006	1278	21	4	2	7	1	6	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0007	1278	19	15	2	1	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0008	1278	11	2	5	2	0	2	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0009	1278	11	0	1	9	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0010	1278	9	5	1	2	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0011	1278	8	0	3	0	0	5	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0012	1278	7	0	0	1	0	6	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0013	1278	7	6	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0014	1278	5	0	1	0	1	3	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0015	1278	4	4	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0016	1278	4	3	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0017	1278	2	1	0	0	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0018	1278	2	1	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0019	1278	1	0	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0020	1278	1	0	0	1	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0021	1278	1	0	0	0	1	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0022	1278	1	0	0	1	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0023	1278	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0024	1278	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0025	1278	1	0	0	0	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0026	1278	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	c0027	1278	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM32_chr9_116682305_116706299	1/0	c0001	1962	389	86	70	185	11	36	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/1	c0002	1962	49	6	5	31	3	3	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	c0003	1962	6	0	0	6	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	c0004	1962	1	1	0	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	c0005	1962	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	c0006	1962	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299