JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM32_chr9_116682305_116706299	0/0	c0007	1962	1	1	0	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	c0008	1962	1	0	1	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	c0009	1962	1	0	0	0	0	1	copy fasta	TRIM32	chr9	116682305	116706299
TRIM33_chr1_114387790_114516203	0/0	c0001	3384	93	26	24	25	4	14	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/1	c0002	3384	63	25	16	5	2	14	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	1/0	c0003	3384	28	1	12	14	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	c0004	3384	10	8	0	1	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	c0005	3384	6	6	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	c0006	3384	5	4	0	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	c0007	3384	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	c0008	3384	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	c0009	3384	1	0	0	0	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM34_chr11_5620001_5649398	1/1	c0001	1467	203	51	36	85	12	17	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0002	1467	149	20	25	79	1	24	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0003	1467	30	1	10	19	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0004	1467	29	12	5	4	3	5	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0005	1467	5	4	1	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0006	1467	3	3	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0007	1467	2	0	0	0	0	2	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0009	1454	1	0	0	1	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0010	1467	1	0	1	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0011	1467	1	1	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	c0012	1467	1	1	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM35_chr8_27279886_27316272	1/1	c0001	1482	356	70	79	149	12	44	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0002	1482	21	0	0	21	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0003	1482	11	11	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0004	1482	7	6	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0005	1482	3	3	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0006	1482	3	3	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0007	1482	2	0	2	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0008	1482	2	0	0	0	2	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0009	1482	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0010	1482	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0011	1482	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0012	1482	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0013	1482	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0014	1482	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	c0015	1482	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM36_chr5_115119772_115174908	0/1	c0001	2151	219	28	50	100	16	24	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0002	2151	77	8	13	50	0	6	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0003	2151	37	15	3	18	1	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0004	2151	28	21	1	6	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0005	2151	14	2	1	10	0	1	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0006	2151	9	9	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0007	2151	6	0	0	6	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	1/0	c0008	2151	4	2	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0009	2151	4	4	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0010	2151	3	2	1	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0011	2151	2	0	1	0	1	0	copy fasta	TRIM36	chr5	115119772	115174908