JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM36_chr5_115119772_115174908	0/0	c0012	2151	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0013	2151	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0014	2151	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0015	2151	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	c0016	2151	1	0	0	0	0	1	copy fasta	TRIM36	chr5	115119772	115174908
TRIM37_chr17_58993202_59111880	1/1	c0001	2895	327	84	63	138	10	30	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0002	2895	5	4	1	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0003	2895	4	0	1	0	2	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0004	2895	1	0	0	0	0	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0005	2895	1	1	0	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0006	2895	1	1	0	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0007	2895	1	0	0	1	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0008	2895	1	0	0	1	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	c0009	2895	1	0	1	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM38_chr6_25957802_25996231	1/1	c0001	1398	287	73	57	108	11	36	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0002	1398	30	3	9	10	4	4	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0003	1398	14	0	0	14	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0004	1398	13	12	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0005	1398	11	5	5	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0006	1398	5	5	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0007	1398	2	0	2	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0008	1398	1	0	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0009	1398	1	0	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0010	1398	1	0	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	c0011	1398	1	0	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM39_chr6_30321927_30348729	0/1	c0001	1467	241	63	36	100	12	29	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0002	1467	201	26	44	116	5	10	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0003	1467	11	0	4	1	1	5	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0004	1467	2	2	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0005	1467	2	0	0	0	0	2	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0006	1467	2	0	0	2	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0007	1467	1	0	0	1	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM3_chr11_6443613_6478941	1/1	c0001	2235	306	61	61	133	13	36	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0002	2235	60	26	16	5	4	9	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0003	2235	4	1	1	0	0	2	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0004	2235	2	1	1	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0005	2235	2	0	0	0	1	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0006	2235	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0007	2235	1	1	0	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0008	2235	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0009	2235	1	1	0	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0010	2235	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0011	2235	1	1	0	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0012	2235	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0013	2235	1	0	0	0	0	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0014	2235	1	0	0	0	0	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	c0015	2235	1	0	1	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM40_chr6_30131140_30153728	0/1	c0001	777	379	81	60	185	14	38	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0002	777	51	2	14	30	3	2	copy fasta	TRIM40	chr6	30131140	30153728