JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM40_chr6_30131140_30153728	0/0	c0003	777	9	0	3	0	0	6	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0004	777	8	7	1	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0005	777	5	3	2	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0006	777	2	1	0	0	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0007	777	2	0	0	2	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0008	777	2	0	0	0	1	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	c0009	777	1	0	0	1	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM41_chr5_181218281_181240808	1/1	c0001	1893	235	46	50	95	14	28	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0002	1893	88	22	8	53	0	5	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0003	1893	27	14	2	6	0	5	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0004	1893	10	0	6	0	1	3	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0005	1893	5	0	0	5	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0006	1893	4	1	2	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0007	1893	4	4	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0008	1893	4	4	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0009	1893	3	0	0	3	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0010	1893	2	2	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0011	1893	2	0	0	0	2	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0012	1908	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0013	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0014	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0015	1893	1	0	0	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0016	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0017	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0018	1893	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0019	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0020	1893	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0021	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0022	1893	1	0	0	1	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0023	1893	1	1	0	0	0	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0024	1893	1	0	0	0	0	1	copy fasta	TRIM41	chr5	181218281	181240808
TRIM41_chr5_181218281_181240808	0/0	c0025	1893	1	0	0	0	1	0	copy fasta	TRIM41	chr5	181218281	181240808
TRIM42_chr3_140673064_140706150	0/0	c0001	2172	230	55	37	111	3	24	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/1	c0002	2172	137	11	30	75	7	13	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0003	2172	15	12	3	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0004	2172	10	9	1	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0005	2172	5	5	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0006	2172	2	2	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0007	2172	2	0	0	2	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0008	2172	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	1/0	c0009	2172	1	0	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0011	2172	1	0	1	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0012	2172	1	0	0	1	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0013	2172	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0014	2172	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0015	2172	1	1	0	0	0	0	copy fasta	TRIM42	chr3	140673064	140706150
TRIM42_chr3_140673064_140706150	0/0	c0016	2172	1	0	0	0	0	1	copy fasta	TRIM42	chr3	140673064	140706150
TRIM43B_chr2_95472008_95489754	0/0	c0001	1341	345	84	61	157	8	35	copy fasta	TRIM43B	chr2	95472008	95489754
TRIM43B_chr2_95472008_95489754	1/1	c0002	1341	50	2	2	38	2	4	copy fasta	TRIM43B	chr2	95472008	95489754