JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BEST1_chr11_61945351_61969461	0/0	c0002	1758	48	30	4	5	2	7	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	1/0	c0003	1758	44	19	12	1	6	5	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0004	1758	43	19	5	16	0	3	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/1	c0005	1758	22	0	13	0	6	2	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0006	1758	18	0	14	4	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0007	1758	15	3	7	0	2	3	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0008	1758	11	10	1	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0009	1758	11	1	1	9	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0010	1758	4	0	0	0	0	4	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0011	1758	3	0	2	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0012	1758	3	0	2	0	0	1	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0013	1758	3	2	1	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0014	1758	3	0	1	0	2	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0015	1758	2	2	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0016	1758	2	0	0	2	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0017	1758	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0018	1758	1	1	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0019	1758	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0020	1758	1	1	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0021	1758	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0022	1758	1	1	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0023	1758	1	1	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0024	1758	1	1	0	0	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST1_chr11_61945351_61969461	0/0	c0025	1758	1	0	0	1	0	0	copy fasta	BEST1	chr11	61945351	61969461
BEST2_chr19_12746791_12763458	1/0	c0001	1530	330	71	56	147	14	41	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/1	c0002	1530	12	0	9	0	1	1	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0003	1530	9	9	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0004	1530	7	7	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0005	1530	5	0	5	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0006	1530	5	5	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0007	1530	4	0	0	4	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0008	1530	4	0	1	0	3	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0009	1530	3	2	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0010	1530	3	0	0	3	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0011	1530	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0012	1530	1	0	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0013	1530	1	0	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0014	1530	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0015	1530	1	1	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0016	1530	1	1	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0017	1530	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	c0018	1530	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST3_chr12_69648609_69704303	0/1	c0001	2007	306	64	59	136	17	29	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0002	2007	19	1	4	7	0	7	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0003	2007	16	9	4	1	0	2	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	1/0	c0004	2007	10	9	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0005	2007	4	4	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0006	2007	4	4	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0007	2007	1	0	1	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	c0008	2007	1	0	0	0	0	1	copy fasta	BEST3	chr12	69648609	69704303