JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM45_chr1_117106060_117126749	0/0	c0014	1743	1	0	0	1	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0015	1743	1	0	0	0	1	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM45_chr1_117106060_117126749	0/0	c0016	1743	1	1	0	0	0	0	copy fasta	TRIM45	chr1	117106060	117126749
TRIM46_chr1_155168849_155189970	0/0	c0001	2280	167	22	33	93	7	12	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	1/1	c0002	2280	161	69	28	24	9	29	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0003	2280	7	0	0	7	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0004	2280	3	3	0	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0005	2280	3	3	0	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0006	2280	2	0	0	1	0	1	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0007	2280	1	0	1	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0008	2280	1	0	0	1	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0010	2280	1	0	0	1	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM46_chr1_155168849_155189970	0/0	c0011	2280	1	1	0	0	0	0	copy fasta	TRIM46	chr1	155168849	155189970
TRIM47_chr17_75869164_75883581	1/1	c0001	1917	253	46	50	118	11	26	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0002	1917	68	31	8	20	3	6	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0003	1917	11	1	0	10	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0004	1917	10	0	10	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0005	1917	10	8	2	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0006	1917	3	0	0	3	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0007	1917	3	3	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0008	1917	3	3	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0009	1917	2	2	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0010	1917	2	0	2	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0011	1917	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0012	1917	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0013	1917	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0014	1917	1	0	1	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0015	1917	1	0	1	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0016	1917	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0017	1917	1	0	0	1	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0018	1917	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM47_chr17_75869164_75883581	0/0	c0019	1917	1	1	0	0	0	0	copy fasta	TRIM47	chr17	75869164	75883581
TRIM48_chr11_55257155_55276114	1/1	c0001	675	204	51	42	80	6	23	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0002	675	25	9	4	7	2	3	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0003	675	10	1	8	0	0	1	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0004	44	9	0	0	9	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0005	675	4	4	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0006	675	4	3	1	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0007	675	4	0	0	4	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0008	675	2	2	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0009	675	2	1	1	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0010	675	2	0	0	2	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0011	675	2	0	0	2	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0012	675	1	0	0	0	0	1	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0013	675	1	1	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0014	675	1	1	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM48_chr11_55257155_55276114	0/0	c0015	675	1	1	0	0	0	0	copy fasta	TRIM48	chr11	55257155	55276114
TRIM49B_chr11_49023823_49043155	0/0	c0001	1359	195	34	47	87	9	18	copy fasta	TRIM49B	chr11	49023823	49043155
TRIM49B_chr11_49023823_49043155	1/0	c0002	1359	120	5	18	70	4	22	copy fasta	TRIM49B	chr11	49023823	49043155