JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM49_chr11_89792655_89813575	0/0	c0003	1359	45	12	9	18	1	5	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0004	1359	33	1	4	25	0	3	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0005	1359	11	0	0	7	0	4	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0006	1359	4	0	0	0	2	2	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0007	1359	4	1	2	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0008	1359	4	3	1	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0009	1359	3	3	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0010	1359	2	0	0	2	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0011	1359	2	0	0	0	0	2	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0012	1359	2	0	0	1	0	1	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0013	1359	2	2	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0014	1359	1	1	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0015	1359	1	0	0	0	0	1	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0016	1359	1	0	0	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0017	1359	1	1	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0018	1359	1	1	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0019	1359	1	0	0	1	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM49_chr11_89792655_89813575	0/0	c0020	1359	1	1	0	0	0	0	copy fasta	TRIM49	chr11	89792655	89813575
TRIM4_chr7_99885403_99924530	1/1	c0001	1425	121	5	28	65	5	16	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0002	1425	101	11	23	45	6	16	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0003	1425	56	45	6	0	2	3	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0004	1425	16	0	1	15	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0005	1425	13	7	2	0	1	3	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0006	1425	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0007	1425	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0008	1425	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0009	1425	2	0	0	2	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0010	1425	1	0	0	1	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0011	1425	1	0	0	0	0	1	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	c0013	1425	1	0	0	0	0	1	copy fasta	TRIM4	chr7	99885403	99924530
TRIM50_chr7_73307536_73333082	1/1	c0001	1464	329	76	69	137	12	33	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0002	1464	2	2	0	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0003	1464	2	2	0	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0004	1464	2	0	1	0	1	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0005	1464	1	0	1	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0006	1464	1	0	0	0	1	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0007	1464	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0008	1464	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0009	1464	1	0	1	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0010	1464	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0012	1464	1	1	0	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0013	1464	1	0	0	0	0	1	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0014	1464	1	1	0	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	c0015	1464	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM51G_chr11_48970498_48988885	0/0	c0001	1359	181	38	41	74	10	18	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0002	1359	106	18	14	54	4	16	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/1	c0003	1359	76	23	12	37	0	3	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0004	1359	29	0	2	23	1	3	copy fasta	TRIM51G	chr11	48970498	48988885