JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM51G_chr11_48970498_48988885	1/0	c0005	1359	10	9	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0006	1359	7	5	1	0	1	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0007	1359	3	2	1	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0008	1359	2	0	0	2	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0009	1359	1	0	1	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0011	1359	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0012	1359	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0014	1359	1	1	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0015	1359	1	1	0	0	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0016	1359	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0017	1359	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	c0018	1359	1	0	0	1	0	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51_chr11_55878297_55896810	0/0	c0001	1359	207	26	29	123	6	23	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0002	1359	108	21	19	55	1	12	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/1	c0003	1359	74	30	11	25	2	5	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0004	1359	6	6	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0005	1359	5	0	3	0	2	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0006	1359	5	1	2	0	2	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0007	1359	5	5	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0008	1359	3	0	0	3	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	1/0	c0009	1359	3	2	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0010	1359	3	2	1	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0011	1359	3	0	2	0	1	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0012	1359	2	0	0	0	0	2	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0013	1359	2	2	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0014	1359	2	2	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0015	1359	1	0	1	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0016	1359	1	0	1	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0017	1359	1	0	0	1	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0018	1359	1	0	0	1	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0019	1359	1	0	1	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0020	1359	1	0	0	0	0	1	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0021	1359	1	1	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	c0022	1359	1	0	0	0	0	1	copy fasta	TRIM51	chr11	55878297	55896810
TRIM52_chr5_181250147_181266143	1/1	c0001	864	208	12	43	123	7	21	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	c0002	861	128	53	7	58	0	10	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	c0003	861	70	31	16	7	7	9	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	c0004	861	4	4	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM54_chr2_27277429_27312435	1/1	c0001	1077	267	81	58	86	14	26	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	c0002	1077	3	3	0	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	c0003	1077	2	0	2	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	c0004	1077	1	0	0	0	0	1	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	c0005	1077	1	0	0	0	0	1	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	c0006	1077	1	1	0	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM55_chr8_66122129_66180485	1/1	c0001	1647	167	26	39	68	12	20	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0002	1647	30	27	2	0	0	1	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0003	1647	25	19	2	0	0	4	copy fasta	TRIM55	chr8	66122129	66180485