JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TRIM55_chr8_66122129_66180485	0/0	c0004	1647	10	10	0	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0005	1647	9	0	1	8	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0006	1647	2	2	0	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0007	1647	1	1	0	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0008	1647	1	0	1	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0009	1647	1	0	1	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0010	1647	1	0	0	0	0	1	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	c0011	1647	1	1	0	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM56_chr7_101080481_101102967	0/0	c0001	2268	158	27	31	73	7	20	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	1/1	c0002	2268	111	4	23	60	2	20	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0003	2268	66	33	5	24	1	3	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0004	2268	19	0	0	19	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0005	2268	19	12	6	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0006	2268	11	0	0	10	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0007	2268	6	0	5	0	1	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0008	2268	5	5	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0009	2268	5	5	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0010	2268	5	0	0	5	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0011	2268	3	3	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0012	2268	2	0	0	2	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0013	2268	2	2	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0014	2268	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0015	2268	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0016	2268	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0017	2268	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0018	2268	1	0	0	0	1	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0019	2268	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0020	2268	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	c0021	2268	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM58_chr1_247852187_247885138	0/0	c0001	1461	83	0	20	48	2	13	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0002	1461	81	2	19	42	6	12	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0003	1461	62	5	15	32	5	5	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0004	1461	49	2	12	27	2	6	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0005	1461	34	7	1	23	0	3	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	1/0	c0006	1461	17	12	4	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0007	1461	16	15	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0008	1461	12	6	1	3	1	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0009	1461	11	4	2	2	1	2	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0010	1461	8	8	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0011	1461	7	7	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0012	1461	7	0	0	6	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0013	1461	6	0	3	2	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0014	1461	5	4	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0015	1461	5	3	2	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0016	1461	4	1	2	0	1	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0017	1461	4	4	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0018	1461	3	0	0	3	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0019	1461	3	0	1	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	c0020	1461	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/1	c0021	1461	2	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138